View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4831_high_5 (Length: 304)
Name: NF4831_high_5
Description: NF4831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4831_high_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 8 - 295
Target Start/End: Original strand, 14609104 - 14609394
Alignment:
| Q |
8 |
ttatcaggtacaagatttgcagagattgttttatagatgcccaaagcgatactggcatgtgtcccggttgtagagagccttacaaagtaggagaatacga |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14609104 |
ttatcaggtacaagatttgcagagattgttttatagatgcccaaagcgatactggcatgtgtcccggttgtagagagccttacaaagtaggagaatacga |
14609203 |
T |
|
| Q |
108 |
ggatgat---caagattatgacaatgcagcactacccttactggctccacctggctccaaaaacaatatgtcagttatgaagagaaataaaaatggagaa |
204 |
Q |
| |
|
||||||| ||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
14609204 |
ggatgataaccaagattatgacactgcagcactaccattactggctccacctggttccaaaaacaatatgtcagttatgaagagaaatcaaaatggagaa |
14609303 |
T |
|
| Q |
205 |
tttgatcacaataaatggttgtttgagaccaaaggtacctatggagttggcaatgcatattggcctccagacgatgaaaatggaggtgatg |
295 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14609304 |
tttgatcacaataaatggttgtttgagaccaaaggtacctatggagttggcaatgcatattggcctccagacgatgaaaatggaggtgatg |
14609394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 187 - 275
Target Start/End: Complemental strand, 14599228 - 14599140
Alignment:
| Q |
187 |
agaaataaaaatggagaatttgatcacaataaatggttgtttgagaccaaaggtacctatggagttggcaatgcatattggcctccaga |
275 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
14599228 |
agaaatcaaaatggagaatttgatcacaataaatggttgtttgagaccaaaggtacctatggagttggcaatgcttattggcctccaga |
14599140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 8 - 108
Target Start/End: Complemental strand, 14599389 - 14599289
Alignment:
| Q |
8 |
ttatcaggtacaagatttgcagagattgttttatagatgcccaaagcgatactggcatgtgtcccggttgtagagagccttacaaagtaggagaatacga |
107 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| || | || || |||| ||||||||| |||| ||||| | |||||||||||||||||| |
|
|
| T |
14599389 |
ttatcaggtacaagatttgtagagattgttttatagatgcgcagaaagaaaccggcacgtgtcccggatgtaaggagccattcaaagtaggagaatacga |
14599290 |
T |
|
| Q |
108 |
g |
108 |
Q |
| |
|
| |
|
|
| T |
14599289 |
g |
14599289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 205 - 260
Target Start/End: Complemental strand, 15420619 - 15420564
Alignment:
| Q |
205 |
tttgatcacaataaatggttgtttgagaccaaaggtacctatggagttggcaatgc |
260 |
Q |
| |
|
|||||||| |||| ||||||||||||||| ||||| ||||||||| |||| ||||| |
|
|
| T |
15420619 |
tttgatcataatagatggttgtttgagactaaaggaacctatggaattggaaatgc |
15420564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University