View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4831_low_1 (Length: 542)
Name: NF4831_low_1
Description: NF4831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4831_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 382
Target Start/End: Complemental strand, 43572060 - 43571680
Alignment:
| Q |
1 |
tcatcatttcactagttaataatggcaattgaaccattaacagtttggtttccttaccaaattgaaccatcaacaacccaacttaagattttttggtgaa |
100 |
Q |
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| T |
43572060 |
tcatcatttcactagttaataatggcaattgaaccattaacagtttggtttccttaccaaattgaaccatcaacaacccaacttaagattttttggtgaa |
43571961 |
T |
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| Q |
101 |
aatgtagtgttaaatttcactacgtattcctctgtgtagggctaagttatttcggtttaataatacttggctagtnnnnnnnnttataagaaaggatttg |
200 |
Q |
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| T |
43571960 |
aatgtagtgttaaatttcactacgtattcctctgtgtagggctaagttatttcggtttaataatacttggctagtaaaaaaaattataagaaaggatttg |
43571861 |
T |
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| Q |
201 |
tgttgaaagnnnnnnnttaagattactgaaatttggatattttggtagtcttgttgtgaaatttcaacatgtttattggaaaattgaactggctgatttc |
300 |
Q |
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| T |
43571860 |
tgttgaaag-aaaaaattaagattactgaaatttggatattttggtagtattgttgtgaaatttcaacatgtttattggaaaattgaactggctgatttc |
43571762 |
T |
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| Q |
301 |
aagaccgagaatgtttggtttctcctcggaagaaagaaatcaaagatatatgattatctagtgtatgtttagttaagtggtt |
382 |
Q |
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| T |
43571761 |
aagaccgagaatgtttggtttctcctcggaagaaagaaatcaaagatatatgattatttagtgtatgtttagttaagtggtt |
43571680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 477 - 542
Target Start/End: Complemental strand, 43571573 - 43571508
Alignment:
| Q |
477 |
tgtttggatacattcaagtgagttgaaatgtgaatttggatacaaaaatcaactctagaatcaaaa |
542 |
Q |
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| T |
43571573 |
tgtttggatacattcaagtgagttgaaatgtgaatttggatacaaaaatcaactctagaattaaaa |
43571508 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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