View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4832_high_1 (Length: 495)
Name: NF4832_high_1
Description: NF4832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4832_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 132; Significance: 2e-68; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 191 - 346
Target Start/End: Original strand, 1904604 - 1904759
Alignment:
| Q |
191 |
acaaccacaccaccacgtggagcctgcggaagatatatgtggaaaattaagagttagctaattacctattatacggtatgttatccggtttagaccgtgt |
290 |
Q |
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| T |
1904604 |
acaaccacaccaccacgtggagcctgcggaagatatatgtggaaaattaagagttagctaattacctattatacggcatgttatcgcgtttagatcgtgt |
1904703 |
T |
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| Q |
291 |
ttgaataaacaatttagctaaacatttatagcataaatgcttattgtatgagtgat |
346 |
Q |
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| T |
1904704 |
ttgaataaacaacttagctaaacatttatagcataaatgcttatcgtatgagtgat |
1904759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 191 - 346
Target Start/End: Original strand, 1908837 - 1908992
Alignment:
| Q |
191 |
acaaccacaccaccacgtggagcctgcggaagatatatgtggaaaattaagagttagctaattacctattatacggtatgttatccggtttagaccgtgt |
290 |
Q |
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| T |
1908837 |
acaaccacaccaccacgtggagcctgcggaagatatatgtggaaaattaagagttagctaattacctattatacggcatgttatcgcgtttagatcgtgt |
1908936 |
T |
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| Q |
291 |
ttgaataaacaatttagctaaacatttatagcataaatgcttattgtatgagtgat |
346 |
Q |
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| T |
1908937 |
ttgaataaacaacttagctaaacatttatagcataaatgcttatcgtatgagtgat |
1908992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 413 - 477
Target Start/End: Original strand, 1904819 - 1904883
Alignment:
| Q |
413 |
gattgttatataatcttcccggagagattatgaaattaaattgtttccataaactcgtcgaagct |
477 |
Q |
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| T |
1904819 |
gattgttttataatcttcccggagagattatgaaattaaattgtttccataaactcgtcgaagct |
1904883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 413 - 477
Target Start/End: Original strand, 1909052 - 1909116
Alignment:
| Q |
413 |
gattgttatataatcttcccggagagattatgaaattaaattgtttccataaactcgtcgaagct |
477 |
Q |
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| T |
1909052 |
gattgttttataatcttcccggagagattatgaaattaaattgtttccataaactcgtcgaagct |
1909116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 73 - 127
Target Start/End: Original strand, 1904486 - 1904540
Alignment:
| Q |
73 |
tgaatcacaacgatgataaccgaacttcagttcagttggtgaactattagccaca |
127 |
Q |
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| T |
1904486 |
tgaatcacaacgatgataaccgaacttcaattcagttggtgaactattagtcaca |
1904540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 73 - 127
Target Start/End: Original strand, 1908719 - 1908773
Alignment:
| Q |
73 |
tgaatcacaacgatgataaccgaacttcagttcagttggtgaactattagccaca |
127 |
Q |
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| T |
1908719 |
tgaatcacaacgatgataaccgaacttcaattcagttggtgaactattagtcaca |
1908773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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