View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4832_high_9 (Length: 337)
Name: NF4832_high_9
Description: NF4832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4832_high_9 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 6 - 337
Target Start/End: Original strand, 20295599 - 20295929
Alignment:
| Q |
6 |
agcatcacagatccaaatacaaatcaagagaaactgacacacggccactatatttttatataaaaaagatattaagttttgttgtgacannnnnnnnnct |
105 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
20295599 |
agcatcacagatccaaatacaaatcaagagaaactgacacacggccactatatttttatataaaaaagatattaagttttgttgtgacatttttttt-ct |
20295697 |
T |
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| Q |
106 |
tccaattttattcttcacttgaacatttatttacaattttattattccttcccaatcaaaacttctattattttttagattatagcggaaagacgaactc |
205 |
Q |
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| T |
20295698 |
tccaattttattcttcacttgaacatttgtttacaattttattattccttcccaatcaaaacttctattattttttagattatagcggaaagacgaactc |
20295797 |
T |
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| Q |
206 |
gttaataataagaatagttgtgaatatatgctagggtacttcagaagtttcttagcgtagcatattaagtagcatatttcttttgtaattaatactatta |
305 |
Q |
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|||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20295798 |
gttaataataggaatagttgtgaatatatgctagggtgcttcagaagtttcttagcgtagcatattaagtagcatatttcttttgtaattaatactatta |
20295897 |
T |
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| Q |
306 |
atcgtgtaattccctatataataaaacttcag |
337 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
20295898 |
atcgtgtaattccctatataataaaacttcag |
20295929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 6 - 337
Target Start/End: Original strand, 21082230 - 21082560
Alignment:
| Q |
6 |
agcatcacagatccaaatacaaatcaagagaaactgacacacggccactatatttttatataaaaaagatattaagttttgttgtgacannnnnnnnnct |
105 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
21082230 |
agcatcacagatccaaatacaaatcaagagaaactgacacacggccactatatttttatataaaaaagatattaagttttgttgtgacatttttttt-ct |
21082328 |
T |
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| Q |
106 |
tccaattttattcttcacttgaacatttatttacaattttattattccttcccaatcaaaacttctattattttttagattatagcggaaagacgaactc |
205 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21082329 |
tccaattttattcttcacttgaacatttgtttacaattttattattccttcccaatcaaaacttctattattttttagattatagcggaaagacgaactc |
21082428 |
T |
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| Q |
206 |
gttaataataagaatagttgtgaatatatgctagggtacttcagaagtttcttagcgtagcatattaagtagcatatttcttttgtaattaatactatta |
305 |
Q |
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|||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21082429 |
gttaataataggaatagttgtgaatatatgctagggtgcttcagaagtttcttagcgtagcatattaagtagcatatttcttttgtaattaatactatta |
21082528 |
T |
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| Q |
306 |
atcgtgtaattccctatataataaaacttcag |
337 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
21082529 |
atcgtgtaattccctatataataaaacttcag |
21082560 |
T |
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