View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4833-Insertion-3 (Length: 610)

Name: NF4833-Insertion-3
Description: NF4833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4833-Insertion-3
NF4833-Insertion-3
[»] chr1 (2 HSPs)
chr1 (8-610)||(45364129-45364736)
chr1 (41-75)||(51156072-51156106)
[»] chr2 (4 HSPs)
chr2 (8-136)||(7762481-7762609)
chr2 (15-126)||(17486456-17486567)
chr2 (40-138)||(5144661-5144759)
chr2 (13-133)||(13150908-13151028)
[»] chr7 (8 HSPs)
chr7 (15-138)||(38352268-38352391)
chr7 (15-138)||(20354843-20354966)
chr7 (15-126)||(39770270-39770381)
chr7 (40-136)||(45548792-45548888)
chr7 (40-134)||(38970729-38970823)
chr7 (43-136)||(12117036-12117129)
chr7 (92-136)||(30720755-30720799)
chr7 (41-75)||(32124464-32124498)
[»] chr4 (11 HSPs)
chr4 (15-141)||(48403195-48403321)
chr4 (8-136)||(33524031-33524159)
chr4 (8-134)||(16171192-16171317)
chr4 (16-138)||(53346985-53347107)
chr4 (40-136)||(19273488-19273584)
chr4 (20-136)||(13093571-13093687)
chr4 (40-136)||(35809966-35810062)
chr4 (15-116)||(33609616-33609717)
chr4 (40-119)||(27864483-27864562)
chr4 (92-136)||(16021480-16021524)
chr4 (40-136)||(17329208-17329304)
[»] chr3 (8 HSPs)
chr3 (8-136)||(31169566-31169694)
chr3 (8-136)||(48886121-48886249)
chr3 (15-136)||(49406623-49406744)
chr3 (40-138)||(51305135-51305233)
chr3 (18-138)||(12975490-12975610)
chr3 (55-134)||(36177884-36177963)
chr3 (41-96)||(35471652-35471707)
chr3 (92-136)||(37182466-37182510)
[»] scaffold1905 (1 HSPs)
scaffold1905 (15-126)||(735-846)
[»] chr8 (5 HSPs)
chr8 (15-127)||(23550404-23550516)
chr8 (8-138)||(44503920-44504050)
chr8 (17-136)||(40284157-40284276)
chr8 (40-136)||(26245203-26245299)
chr8 (22-136)||(30528943-30529057)
[»] chr5 (7 HSPs)
chr5 (15-125)||(4218725-4218835)
chr5 (7-137)||(32362750-32362880)
chr5 (40-136)||(39239120-39239216)
chr5 (17-136)||(13478991-13479110)
chr5 (13-135)||(4938741-4938863)
chr5 (41-140)||(9958369-9958468)
chr5 (41-75)||(3455507-3455541)
[»] chr6 (2 HSPs)
chr6 (40-136)||(26653556-26653652)
chr6 (40-136)||(26759524-26759620)
[»] scaffold0016 (1 HSPs)
scaffold0016 (49-138)||(65711-65800)
[»] scaffold0004 (1 HSPs)
scaffold0004 (35-96)||(106513-106574)
[»] scaffold0021 (1 HSPs)
scaffold0021 (41-96)||(109557-109612)
[»] scaffold0015 (1 HSPs)
scaffold0015 (41-96)||(83246-83301)


Alignment Details
Target: chr1 (Bit Score: 437; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 8 - 610
Target Start/End: Original strand, 45364129 - 45364736
Alignment:
Q  8 ccctacggtcagactttcaacatacttaaacatttcatcatctctctcctcttccctcattttcaatacccttctccaatgatttcaacatattgaaaat 107  Q
    |||| ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45364129 ccctgcggtcagactttcaagatacttaaacctttcatcatctctctcctcttccctcattttcaatacccttctccaatgatttcaacatattgaaaat 45364228  T
Q  108 ggcattcaacaagccattgtaaatggtctaacacannnnnnnattcggtgaaagtcacatgtatctcaccattttaaataagtatttagaagaaaatatt 207  Q
    | ||||||||||||||||||||||||||||| |||       ||| |||||||||||| |||||||||||||||||| |||||||||| |||||||| ||    
T  45364229 gacattcaacaagccattgtaaatggtctaagacatttttttatttggtgaaagtcacgtgtatctcaccattttaagtaagtatttataagaaaatgtt 45364328  T
Q  208 tatatcatttctctatataaagtaggagtgatataaacatcttcattttaacacgcgctaacatgaataacatcccctctcttatggacactttatagtt 307  Q
    |||||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||| |||||||||||||||||| ||||||||||| ||    
T  45364329 tatatcatttctctatataaagtaggagtgatataaacatcaacattttaacacacgctaacatgagtaacatcccctctcttattgacactttataatt 45364428  T
Q  308 gattcattttaaacaataagactcacgtgaatttcatcatgagtgaatgctagaaataaaatgttgatatcatttctcctatataaaattcaaataaatt 407  Q
    ||||||||||||||||| |||| ||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  45364429 gattcattttaaacaatgagacccacatgaatttcattatgagtgaatgctaaaaataaaatgttgatatcatttctcctatataaaattcaaataaatt 45364528  T
Q  408 ttgcac-ttttaaaaccggttctaaccaattcaaaagtgaaataaaacctacacacaattcttatgaaatattttgtttttaagcaattgatatagaaat 506  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  45364529 ttgcactttttaaaaccggttctaaccaattcaaaagtgaaataaaacctacacacaattcttatgaaatattttgtttttaagcaatttatatagaaat 45364628  T
Q  507 gcatttggtgatattgaaaa----nnnnnnnnnnngggatagtggttactaactaccataacaaaacataaaaagacattagttagccataacttgaact 602  Q
    ||||||||||||||||| ||               |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45364629 gcatttggtgatattgacaatttttatttttttttgggatagtggttactaactaccataacaaaacataaaaagacattagttagccataacttgaact 45364728  T
Q  603 caaagtta 610  Q
    ||||||||    
T  45364729 caaagtta 45364736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 41 - 75
Target Start/End: Complemental strand, 51156106 - 51156072
Alignment:
Q  41 ttcatcatctctctcctcttccctcattttcaata 75  Q
    |||||||||||||||||||||||||||||||||||    
T  51156106 ttcatcatctctctcctcttccctcattttcaata 51156072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 117; Significance: 3e-59; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 8 - 136
Target Start/End: Complemental strand, 7762609 - 7762481
Alignment:
Q  8 ccctacggtcagactttcaacatacttaaacatttcatcatctctctcctcttccctcattttcaatacccttctccaatgatttcaacatattgaaaat 107  Q
    ||||||||||||||||||||||||||||||| |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7762609 ccctacggtcagactttcaacatacttaaacctttcatcgcctctctcctcttccctcattttcaatacccttctccaatgatttcaacatattgaaaat 7762510  T
Q  108 ggcattcaacaagccattgtaaatggtct 136  Q
    |||||||||||||||||||||||||||||    
T  7762509 ggcattcaacaagccattgtaaatggtct 7762481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 15 - 126
Target Start/End: Original strand, 17486456 - 17486567
Alignment:
Q  15 gtcagactttcaacatacttaaacatttcatcatctctctcctcttccctcattttcaatacccttctccaatgatttcaacatattgaaaatggcattc 114  Q
    |||||||||||||||||||||| | || ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| || |||    
T  17486456 gtcagactttcaacatacttaatccttccatcacctctctcctcttccctcattttcaatacccttctccaatcatttcaacatattaaaaattgctttc 17486555  T
Q  115 aacaagccattg 126  Q
    ||||||||||||    
T  17486556 aacaagccattg 17486567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 40 - 138
Target Start/End: Complemental strand, 5144759 - 5144661
Alignment:
Q  40 tttcatcatctctctcctcttccctcattttcaatacccttctccaatgatttcaacatattgaaaatggcattcaacaagccattgtaaatggtctaa 138  Q
    |||||||| |||| |||||||| ||||||||||||| || |||| |||  |||||| |||||||||||||||||||| | |||||||||||||||||||    
T  5144759 tttcatcacctctttcctcttctctcattttcaatatccctctctaatcgtttcaatatattgaaaatggcattcaataggccattgtaaatggtctaa 5144661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 13 - 133
Target Start/End: Complemental strand, 13151028 - 13150908
Alignment:
Q  13 cggtcagactttcaacatacttaaacatttcatcatctctctcctcttccctcattttcaatacccttctccaatgatttcaacatattgaaaatggcat 112  Q
    |||||| | |||||||||  |||| | |||||||| |||| || ||||| ||||||||||||||||  ||  ||||||||||| ||||||||||||||||    
T  13151028 cggtcaaaatttcaacatgtttaaccttttcatcacctctttcatcttctctcattttcaataccccactataatgatttcaatatattgaaaatggcat 13150929  T
Q  113 tcaacaagccattgtaaatgg 133  Q
    |||| |  |||||||| ||||    
T  13150928 tcaatagaccattgtatatgg 13150908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 88; Significance: 5e-42; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 15 - 138
Target Start/End: Original strand, 38352268 - 38352391
Alignment:
Q  15 gtcagactttcaacatacttaaacatttcatcatctctctcctcttccctcattttcaatacccttctccaatgatttcaacatattgaaaatggcattc 114  Q
    |||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| || |||    
T  38352268 gtcagactttcaacatacttaatcctttcatcacctctctcctcttccctcattttcaatacccttctccaatcatttcaaaatattgaaaattgctttc 38352367  T
Q  115 aacaagccattgtaaatggtctaa 138  Q
    |||||||||||| | |||||||||    
T  38352368 aacaagccattggagatggtctaa 38352391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 15 - 138
Target Start/End: Original strand, 20354843 - 20354966
Alignment:
Q  15 gtcagactttcaacatacttaaacatttcatcatctctctcctcttccctcattttcaatacccttctccaatgatttcaacatattgaaaatggcattc 114  Q
    |||||||||||||||||||||| | |||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| || |||    
T  20354843 gtcagactttcaacatacttaatcctttcatcacctctctcctctttcctcattttcaatacccttctccaatcatttcaacatattgaaaattgctttc 20354942  T
Q  115 aacaagccattgtaaatggtctaa 138  Q
    || |||||||||||  ||||||||    
T  20354943 aataagccattgtaggtggtctaa 20354966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 15 - 126
Target Start/End: Original strand, 39770270 - 39770381
Alignment:
Q  15 gtcagactttcaacatacttaaacatttcatcatctctctcctcttccctcattttcaatacccttctccaatgatttcaacatattgaaaatggcattc 114  Q
    |||||||||||||||||||||| | ||||||||  ||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||| || |||    
T  39770270 gtcagactttcaacatacttaatcctttcatcacgtctctcctctttcctcattttcaatacccttcttcaatcatttcaacatattgaaaattgctttc 39770369  T
Q  115 aacaagccattg 126  Q
    ||||||||||||    
T  39770370 aacaagccattg 39770381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 40 - 136
Target Start/End: Complemental strand, 45548888 - 45548792
Alignment:
Q  40 tttcatcatctctctcctcttccctcattttcaatacccttctccaatgatttcaacatattgaaaatggcattcaacaagccattgtaaatggtct 136  Q
    ||||| || ||||||||||||||||||| |||||||  || |||||||  | ||||||| ||||| |||| ||||||||||||||||||||||||||    
T  45548888 tttcaacacctctctcctcttccctcatattcaatagtctcctccaatagtctcaacatgttgaatatggtattcaacaagccattgtaaatggtct 45548792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 40 - 134
Target Start/End: Original strand, 38970729 - 38970823
Alignment:
Q  40 tttcatcatctctctcctcttccctcattttcaatacccttctccaatgatttcaacatattgaaaatggcattcaacaagccattgtaaatggt 134  Q
    |||||||| |||  |||||||| ||||||||||||||||  |||||||  |||||| || ||||||||||||||||| | |||||||||||||||    
T  38970729 tttcatcacctccgtcctcttctctcattttcaataccccactccaatagtttcaatatgttgaaaatggcattcaataggccattgtaaatggt 38970823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 43 - 136
Target Start/End: Original strand, 12117036 - 12117129
Alignment:
Q  43 catcatctctctcctcttccctcattttcaatacccttctccaatgatttcaacatattgaaaatggcattcaacaagccattgtaaatggtct 136  Q
    ||||| |||| |||||||| ||||||||||||||||  || ||||| |||||| || ||||||||||| ||||| | |||||||||||||||||    
T  12117036 catcacctctttcctcttctctcattttcaataccccactacaatggtttcaatatgttgaaaatggccttcaataggccattgtaaatggtct 12117129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 92 - 136
Target Start/End: Original strand, 30720755 - 30720799
Alignment:
Q  92 tcaacatattgaaaatggcattcaacaagccattgtaaatggtct 136  Q
    ||||||| ||||| |||||||||||||||||||||||| ||||||    
T  30720755 tcaacatgttgaatatggcattcaacaagccattgtaagtggtct 30720799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 41 - 75
Target Start/End: Complemental strand, 32124498 - 32124464
Alignment:
Q  41 ttcatcatctctctcctcttccctcattttcaata 75  Q
    |||||||||||||||||||| ||||||||||||||    
T  32124498 ttcatcatctctctcctctttcctcattttcaata 32124464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 87; Significance: 2e-41; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 15 - 141
Target Start/End: Complemental strand, 48403321 - 48403195
Alignment:
Q  15 gtcagactttcaacatacttaaacatttcatcatctctctcctcttccctcattttcaatacccttctccaatgatttcaacatattgaaaatggcattc 114  Q
    |||||||||||||||||||||| | |||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| || |||    
T  48403321 gtcagactttcaacatacttaatcctttcatcacctctcttctcttccctcattttcaatacccttctccaatcatttcaacatattgaaaattgctttc 48403222  T
Q  115 aacaagccattgtaaatggtctaacac 141  Q
    |||||||||||  | ||||||||||||    
T  48403221 aacaagccattagagatggtctaacac 48403195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 8 - 136
Target Start/End: Original strand, 33524031 - 33524159
Alignment:
Q  8 ccctacggtcagactttcaacatacttaaacatttcatcatctctctcctcttccctcattttcaatacccttctccaatgatttcaacatattgaaaat 107  Q
    |||| ||||||||||||||||||  |||||| |||||||| ||||||||||||| ||||||||||||| || |||| ||||||||||| |  ||||||||    
T  33524031 ccctgcggtcagactttcaacatgtttaaacctttcatcacctctctcctcttctctcattttcaataaccctctcaaatgatttcaataggttgaaaat 33524130  T
Q  108 ggcattcaacaagccattgtaaatggtct 136  Q
    ||||||||| ||||||||||| |||||||    
T  33524131 ggcattcaataagccattgtagatggtct 33524159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 8 - 134
Target Start/End: Complemental strand, 16171317 - 16171192
Alignment:
Q  8 ccctacggtcagactttcaacatacttaaacatttcatcatctctctcctcttccctcattttcaatacccttctccaatgatttcaacatattgaaaat 107  Q
    |||| ||||||||  |||||||||||||| | |||||||| |||||||||||||||| || ||||||| ||||||||||||   ||||||| ||||| ||    
T  16171317 ccctgcggtcagatattcaacatacttaatcctttcatcacctctctcctcttcccttatattcaatagccttctccaatg-gctcaacatgttgaatat 16171219  T
Q  108 ggcattcaacaagccattgtaaatggt 134  Q
    |||||||||||||||||||||||||||    
T  16171218 ggcattcaacaagccattgtaaatggt 16171192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 16 - 138
Target Start/End: Complemental strand, 53347107 - 53346985
Alignment:
Q  16 tcagactttcaacatacttaaacatttcatcatctctctcctcttccctcattttcaatacccttctccaatgatttcaacatattgaaaatggcattca 115  Q
    ||||| |||||||||  |||| | |||||||| |||| |||| ||| |||||||||||||||| ||||||||| |||||| |||||||||||||||||||    
T  53347107 tcagaatttcaacatgtttaaccctttcatcacctctttccttttctctcattttcaatacccctctccaatggtttcaatatattgaaaatggcattca 53347008  T
Q  116 acaagccattgtaaatggtctaa 138  Q
    | | |||||||||||||||||||    
T  53347007 ataggccattgtaaatggtctaa 53346985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 40 - 136
Target Start/End: Original strand, 19273488 - 19273584
Alignment:
Q  40 tttcatcatctctctcctcttccctcattttcaatacccttctccaatgatttcaacatattgaaaatggcattcaacaagccattgtaaatggtct 136  Q
    ||||| || ||||||||||||||||||| ||||||| ||| |||||||| | ||||||| ||||| |||||||||||||||||||||||||||||||    
T  19273488 tttcaacacctctctcctcttccctcatattcaatagcctcctccaatggtctcaacatgttgaatatggcattcaacaagccattgtaaatggtct 19273584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 20 - 136
Target Start/End: Complemental strand, 13093687 - 13093571
Alignment:
Q  20 actttcaacatacttaaacatttcatcatctctctcctcttccctcattttcaatacccttctccaatgatttcaacatattgaaaatggcattcaacaa 119  Q
    |||||||||||  | || | ||||| || ||||||||||||||||||| |||| || ||| |||||||| | ||||||| ||||| ||||||||||||||    
T  13093687 actttcaacatgttgaaccttttcaacacctctctcctcttccctcatattcattagcctcctccaatggtctcaacatgttgaatatggcattcaacaa 13093588  T
Q  120 gccattgtaaatggtct 136  Q
    |||||||||||||||||    
T  13093587 gccattgtaaatggtct 13093571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 40 - 136
Target Start/End: Original strand, 35809966 - 35810062
Alignment:
Q  40 tttcatcatctctctcctcttccctcattttcaatacccttctccaatgatttcaacatattgaaaatggcattcaacaagccattgtaaatggtct 136  Q
    ||||| || ||||||||||||||||||| |||| || ||| |||||||| | ||||||| ||||| |||||||||||||||||||||||||||||||    
T  35809966 tttcaacacctctctcctcttccctcatattcagtagcctcctccaatggtctcaacatgttgaatatggcattcaacaagccattgtaaatggtct 35810062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 15 - 116
Target Start/End: Original strand, 33609616 - 33609717
Alignment:
Q  15 gtcagactttcaacatacttaaacatttcatcatctctctcctcttccctcattttcaatacccttctccaatgatttcaacatattgaaaatggcattc 114  Q
    ||||||||||||||||  |||||| |||||||| |||| |||||||| |||||||||||||     ||||||||||||||| |  ||||||||| |||||    
T  33609616 gtcagactttcaacatgtttaaacctttcatcacctctttcctcttctctcattttcaataagtcactccaatgatttcaataggttgaaaatgacattc 33609715  T
Q  115 aa 116  Q
    ||    
T  33609716 aa 33609717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 40 - 119
Target Start/End: Original strand, 27864483 - 27864562
Alignment:
Q  40 tttcatcatctctctcctcttccctcattttcaatacccttctccaatgatttcaacatattgaaaatggcattcaacaa 119  Q
    ||||| || ||||||||||||||||||| ||||||| ||| |||||| | | ||||||| ||||| ||||||||||||||    
T  27864483 tttcaacacctctctcctcttccctcatattcaatagcctcctccaacggtctcaacatgttgaatatggcattcaacaa 27864562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 92 - 136
Target Start/End: Original strand, 16021480 - 16021524
Alignment:
Q  92 tcaacatattgaaaatggcattcaacaagccattgtaaatggtct 136  Q
    ||||||| ||||| |||||||||||||||||||||||| ||||||    
T  16021480 tcaacatgttgaatatggcattcaacaagccattgtaagtggtct 16021524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 40 - 136
Target Start/End: Complemental strand, 17329304 - 17329208
Alignment:
Q  40 tttcatcatctctctcctcttccctcattttcaatacccttctccaatgatttcaacatattgaaaatggcattcaacaagccattgtaaatggtct 136  Q
    |||||||| |||| |||||||| |||||||||||||     |||||||| ||||||||| ||||||||    ||||| | ||||||||| |||||||    
T  17329304 tttcatcacctctttcctcttctctcattttcaatagggcactccaatggtttcaacatgttgaaaatcattttcaataggccattgtagatggtct 17329208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 85; Significance: 3e-40; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 8 - 136
Target Start/End: Complemental strand, 31169694 - 31169566
Alignment:
Q  8 ccctacggtcagactttcaacatacttaaacatttcatcatctctctcctcttccctcattttcaatacccttctccaatgatttcaacatattgaaaat 107  Q
    |||| ||||||||||||||||||  ||||||  ||||||| ||||||||||||| ||||||||||||| || ||||||||||||||||| ||||||||||    
T  31169694 ccctgcggtcagactttcaacatgtttaaacccttcatcacctctctcctcttctctcattttcaataaccctctccaatgatttcaacctattgaaaat 31169595  T
Q  108 ggcattcaacaagccattgtaaatggtct 136  Q
    ||||||||||||||||||||| |||||||    
T  31169594 ggcattcaacaagccattgtagatggtct 31169566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 8 - 136
Target Start/End: Complemental strand, 48886249 - 48886121
Alignment:
Q  8 ccctacggtcagactttcaacatacttaaacatttcatcatctctctcctcttccctcattttcaatacccttctccaatgatttcaacatattgaaaat 107  Q
    |||||||||||||||||||||||  |||||| |||||||| ||||||||||||| || |||||||||| || |||||||||||||||| |  ||||||||    
T  48886249 ccctacggtcagactttcaacatgtttaaacctttcatcacctctctcctcttctctaattttcaataaccctctccaatgatttcaataggttgaaaat 48886150  T
Q  108 ggcattcaacaagccattgtaaatggtct 136  Q
    ||||||||| ||||||||||| |||||||    
T  48886149 ggcattcaataagccattgtagatggtct 48886121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 15 - 136
Target Start/End: Complemental strand, 49406744 - 49406623
Alignment:
Q  15 gtcagactttcaacatacttaaacatttcatcatctctctcctcttccctcattttcaatacccttctccaatgatttcaacatattgaaaatggcattc 114  Q
    |||||| |||||||||  |||| | |||||||| |||| |||||||| ||||||||||||||||  |||||||| |||||| || |||||||||||||||    
T  49406744 gtcagaatttcaacatgtttaaccctttcatcacctctttcctcttctctcattttcaataccccgctccaatggtttcaatatgttgaaaatggcattc 49406645  T
Q  115 aacaagccattgtaaatggtct 136  Q
    || | |||||||||||||||||    
T  49406644 aataggccattgtaaatggtct 49406623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 40 - 138
Target Start/End: Original strand, 51305135 - 51305233
Alignment:
Q  40 tttcatcatctctctcctcttccctcattttcaatacccttctccaatgatttcaacatattgaaaatggcattcaacaagccattgtaaatggtctaa 138  Q
    ||||| || ||||||| ||||||||||| ||||||| ||| |||||||| | ||||||| ||||| |||||||||||||||||||||||||||||||||    
T  51305135 tttcaacacctctctcatcttccctcatattcaatagcctcctccaatggtctcaacatgttgaatatggcattcaacaagccattgtaaatggtctaa 51305233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 18 - 138
Target Start/End: Original strand, 12975490 - 12975610
Alignment:
Q  18 agactttcaacatacttaaacatttcatcatctctctcctcttccctcattttcaatacccttctccaatgatttcaacatattgaaaatggcattcaac 117  Q
    |||||||||||||  |||||| |||||||| |||| |||||||| |||||||||||||  |  ||||||| ||||||| |  |||||||| ||||||||     
T  12975490 agactttcaacatgtttaaacctttcatcacctctttcctcttcgctcattttcaataagccactccaataatttcaataggttgaaaatagcattcaat 12975589  T
Q  118 aagccattgtaaatggtctaa 138  Q
    ||||||||||| |||||||||    
T  12975590 aagccattgtagatggtctaa 12975610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 55 - 134
Target Start/End: Complemental strand, 36177963 - 36177884
Alignment:
Q  55 cctcttccctcattttcaatacccttctccaatgatttcaacatattgaaaatggcattcaacaagccattgtaaatggt 134  Q
    ||||||||||||| ||||||| |||||||||||  | ||||||| ||||| |||||||||||||||||||||||||||||    
T  36177963 cctcttccctcatattcaatagccttctccaatagtctcaacatgttgaatatggcattcaacaagccattgtaaatggt 36177884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 41 - 96
Target Start/End: Complemental strand, 35471707 - 35471652
Alignment:
Q  41 ttcatcatctctctcctcttccctcattttcaatacccttctccaatgatttcaac 96  Q
    |||||||||||||||||||| |||||||||||| |  ||||||||||| |||||||    
T  35471707 ttcatcatctctctcctctttcctcattttcaacaagcttctccaatgctttcaac 35471652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 92 - 136
Target Start/End: Complemental strand, 37182510 - 37182466
Alignment:
Q  92 tcaacatattgaaaatggcattcaacaagccattgtaaatggtct 136  Q
    ||||||| ||||| |||||||||||||||||||||||| ||||||    
T  37182510 tcaacatgttgaatatggcattcaacaagccattgtaagtggtct 37182466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1905 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: scaffold1905
Description:

Target: scaffold1905; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 15 - 126
Target Start/End: Complemental strand, 846 - 735
Alignment:
Q  15 gtcagactttcaacatacttaaacatttcatcatctctctcctcttccctcattttcaatacccttctccaatgatttcaacatattgaaaatggcattc 114  Q
    |||| ||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |||    
T  846 gtcaaactttcaacatacttaatcctttcatcacctctctcctcttccctcattttcaatacccttctccaatcatttcaacatattgaaaattgctttc 747  T
Q  115 aacaagccattg 126  Q
    ||||||||||||    
T  746 aacaagccattg 735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 2e-35; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 15 - 127
Target Start/End: Original strand, 23550404 - 23550516
Alignment:
Q  15 gtcagactttcaacatacttaaacatttcatcatctctctcctcttccctcattttcaatacccttctccaatgatttcaacatattgaaaatggcattc 114  Q
    |||| ||||||||||||||||| | |||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| || |||    
T  23550404 gtcaaactttcaacatacttaatcctttcatcacctctctcctctttcctcattttcaatacccttctccaatcatttcaacatattgaaaattgctttc 23550503  T
Q  115 aacaagccattgt 127  Q
    || ||||||||||    
T  23550504 aataagccattgt 23550516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 8 - 138
Target Start/End: Original strand, 44503920 - 44504050
Alignment:
Q  8 ccctacggtcagactttcaacatacttaaacatttcatcatctctctcctcttccctcattttcaatacccttctccaatgatttcaacatattgaaaat 107  Q
    |||| ||||||||||||||| ||  |||||| |||||||| ||||||||||||| ||||||||||||| || ||||||||||||||||| |  |||||||    
T  44503920 ccctgcggtcagactttcaatatgtttaaacctttcatcacctctctcctcttctctcattttcaataaccctctccaatgatttcaacctgatgaaaat 44504019  T
Q  108 ggcattcaacaagccattgtaaatggtctaa 138  Q
    ||||||||| ||||||||||| |||||||||    
T  44504020 ggcattcaataagccattgtagatggtctaa 44504050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 17 - 136
Target Start/End: Original strand, 40284157 - 40284276
Alignment:
Q  17 cagactttcaacatacttaaacatttcatcatctctctcctcttccctcattttcaatacccttctccaatgatttcaacatattgaaaatggcattcaa 116  Q
    ||||||||||||||  | || | ||||| || ||||||||||||||||||| ||||||| ||| |||||||| | ||||||| ||||| |||||||||||    
T  40284157 cagactttcaacatgttgaaccttttcaacacctctctcctcttccctcatattcaatagcctcctccaatggtctcaacatgttgaatatggcattcaa 40284256  T
Q  117 caagccattgtaaatggtct 136  Q
    ||||||||||||||||||||    
T  40284257 caagccattgtaaatggtct 40284276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 40 - 136
Target Start/End: Original strand, 26245203 - 26245299
Alignment:
Q  40 tttcatcatctctctcctcttccctcattttcaatacccttctccaatgatttcaacatattgaaaatggcattcaacaagccattgtaaatggtct 136  Q
    ||||| || ||||||||||||||||||| ||||||| ||| |||||||| | ||||||| ||||| |||||||||||||||||||||||||||||||    
T  26245203 tttcaacacctctctcctcttccctcatattcaatagcctcctccaatggtctcaacatgttgaatatggcattcaacaagccattgtaaatggtct 26245299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 22 - 136
Target Start/End: Complemental strand, 30529057 - 30528943
Alignment:
Q  22 tttcaacatacttaaacatttcatcatctctctcctcttccctcattttcaatacccttctccaatgatttcaacatattgaaaatggcattcaacaagc 121  Q
    |||||||||  |||| | |||||||| |||| |||||||| |||||||||||||||| ||||||||| |||||| |||||||||||  ||||||| | ||    
T  30529057 tttcaacatgtttaaccctttcatcacctctttcctcttctctcattttcaatacccctctccaatggtttcaatatattgaaaataacattcaatatgc 30528958  T
Q  122 cattgtaaatggtct 136  Q
    |||||||||||||||    
T  30528957 cattgtaaatggtct 30528943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 3e-34; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 15 - 125
Target Start/End: Complemental strand, 4218835 - 4218725
Alignment:
Q  15 gtcagactttcaacatacttaaacatttcatcatctctctcctcttccctcattttcaatacccttctccaatgatttcaacatattgaaaatggcattc 114  Q
    |||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||| |||||||||| ||||||||||||| |||||  | |||    
T  4218835 gtcagactttcaacatacttaatcatttcatcacctctcttctcttccctcattttcaatacgcttctccaatcatttcaacatattaaaaattactttc 4218736  T
Q  115 aacaagccatt 125  Q
    |||||||||||    
T  4218735 aacaagccatt 4218725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 7 - 137
Target Start/End: Complemental strand, 32362880 - 32362750
Alignment:
Q  7 accctacggtcagactttcaacatacttaaacatttcatcatctctctcctcttccctcattttcaatacccttctccaatgatttcaacatattgaaaa 106  Q
    ||||| ||||||||||||||||||  |||||| ||||| || ||||||||||||| ||||||||||||| || ||||||||||||||||||  |||||||    
T  32362880 accctgcggtcagactttcaacatgtttaaacctttcaccacctctctcctcttctctcattttcaataaccctctccaatgatttcaacaggttgaaaa 32362781  T
Q  107 tggcattcaacaagccattgtaaatggtcta 137  Q
    || ||||||| ||||||||||| ||||||||    
T  32362780 tgacattcaataagccattgtagatggtcta 32362750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 40 - 136
Target Start/End: Original strand, 39239120 - 39239216
Alignment:
Q  40 tttcatcatctctctcctcttccctcattttcaatacccttctccaatgatttcaacatattgaaaatggcattcaacaagccattgtaaatggtct 136  Q
    ||||| || ||||||||||||||||||| ||||||| ||| |||||||| | ||||||| ||||| |||||||||||||||||||||||||||||||    
T  39239120 tttcaacacctctctcctcttccctcatattcaatagcctcctccaatggtctcaacatgttgaatatggcattcaacaagccattgtaaatggtct 39239216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 17 - 136
Target Start/End: Complemental strand, 13479110 - 13478991
Alignment:
Q  17 cagactttcaacatacttaaacatttcatcatctctctcctcttccctcattttcaatacccttctccaatgatttcaacatattgaaaatggcattcaa 116  Q
    ||||||||||||||  | || | ||||| || ||||||||||||||||||| ||||| | ||| ||| |||| | ||||||| ||||| ||| |||||||    
T  13479110 cagactttcaacatgttgaaccttttcaacacctctctcctcttccctcatattcaacagcctcctcaaatggtctcaacatgttgaatatgacattcaa 13479011  T
Q  117 caagccattgtaaatggtct 136  Q
    ||||||||||||||||||||    
T  13479010 caagccattgtaaatggtct 13478991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 13 - 135
Target Start/End: Original strand, 4938741 - 4938863
Alignment:
Q  13 cggtcagactttcaacatacttaaacatttcatcatctctctcctcttccctcattttcaatacccttctccaatgatttcaacatattgaaaatggcat 112  Q
    |||||| | |||||||||  |||| | |||||||| |||| |||||||| ||||||||||||||||  || ||||| |||||| || || |||||| |||    
T  4938741 cggtcaaaatttcaacatgtttaaccctttcatcacctctttcctcttctctcattttcaataccccactacaatggtttcaatatgttcaaaatgacat 4938840  T
Q  113 tcaacaagccattgtaaatggtc 135  Q
    |||| | ||||||||||||||||    
T  4938841 tcaataggccattgtaaatggtc 4938863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 41 - 140
Target Start/End: Original strand, 9958369 - 9958468
Alignment:
Q  41 ttcatcatctctctcctcttccctcattttcaatacccttctccaatgatttcaacatattgaaaatggcattcaacaagccattgtaaatggtctaaca 140  Q
    |||||||||||||||||||| ||||||||||||||  ||  ||||||| ||||||| ||||||||||    ||||| | ||||||| | |||||||||||    
T  9958369 ttcatcatctctctcctctttcctcattttcaataggctattccaatggtttcaacctattgaaaatcattttcaataggccattggagatggtctaaca 9958468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 41 - 75
Target Start/End: Original strand, 3455507 - 3455541
Alignment:
Q  41 ttcatcatctctctcctcttccctcattttcaata 75  Q
    |||||||||||||||||||||||||||||||||||    
T  3455507 ttcatcatctctctcctcttccctcattttcaata 3455541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 40 - 136
Target Start/End: Complemental strand, 26653652 - 26653556
Alignment:
Q  40 tttcatcatctctctcctcttccctcattttcaatacccttctccaatgatttcaacatattgaaaatggcattcaacaagccattgtaaatggtct 136  Q
    ||||| || |||||||| |||||||||| ||||||| ||| |||||||| | ||||||| ||||| |||||||||||||||||||||||||||||||    
T  26653652 tttcaacacctctctccccttccctcatattcaatagcctcctccaatggtctcaacatgttgaatatggcattcaacaagccattgtaaatggtct 26653556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 40 - 136
Target Start/End: Complemental strand, 26759620 - 26759524
Alignment:
Q  40 tttcatcatctctctcctcttccctcattttcaatacccttctccaatgatttcaacatattgaaaatggcattcaacaagccattgtaaatggtct 136  Q
    ||||| || |||||||| |||||||||| ||||||| ||| |||||||| | ||||||| ||||| |||||||||||||||||||||||||||||||    
T  26759620 tttcaacacctctctccccttccctcatattcaatagcctcctccaatggtctcaacatgttgaatatggcattcaacaagccattgtaaatggtct 26759524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 49 - 138
Target Start/End: Complemental strand, 65800 - 65711
Alignment:
Q  49 ctctctcctcttccctcattttcaatacccttctccaatgatttcaacatattgaaaatggcattcaacaagccattgtaaatggtctaa 138  Q
    ||||||||||||||||||| ||||||| ||| |||||||| | ||||||| ||||| ||| |||||||||| ||||||||||||||||||    
T  65800 ctctctcctcttccctcatattcaatagcctcctccaatggtctcaacatgttgaatatgacattcaacaaaccattgtaaatggtctaa 65711  T

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Target: scaffold0004 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 35 - 96
Target Start/End: Original strand, 106513 - 106574
Alignment:
Q  35 aaacatttcatcatctctctcctcttccctcattttcaatacccttctccaatgatttcaac 96  Q
    ||||||||||||| |||||||||||| |||||||||||||| ||  |||||||| |||||||    
T  106513 aaacatttcatcacctctctcctctttcctcattttcaatagccccctccaatggtttcaac 106574  T

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Target: scaffold0021 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 41 - 96
Target Start/End: Complemental strand, 109612 - 109557
Alignment:
Q  41 ttcatcatctctctcctcttccctcattttcaatacccttctccaatgatttcaac 96  Q
    |||||||||||||||||||| |||||||||||| |  ||||||||||| |||||||    
T  109612 ttcatcatctctctcctctttcctcattttcaacaagcttctccaatggtttcaac 109557  T

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Target: scaffold0015 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 41 - 96
Target Start/End: Complemental strand, 83301 - 83246
Alignment:
Q  41 ttcatcatctctctcctcttccctcattttcaatacccttctccaatgatttcaac 96  Q
    |||||||||||||||||||| |||||| ||||| |  ||||||||||| |||||||    
T  83301 ttcatcatctctctcctctttcctcatattcaacaagcttctccaatggtttcaac 83246  T

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