View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4833_high_10 (Length: 315)
Name: NF4833_high_10
Description: NF4833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4833_high_10 |
 | |
|
| [»] chr1 (12 HSPs) |
| |
|
| [»] chr4 (2 HSPs) |
| |
|
| [»] chr8 (3 HSPs) |
| |
|
| [»] chr5 (1 HSPs) |
| |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 300; Significance: 1e-169; HSPs: 12)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 8 - 315
Target Start/End: Original strand, 3300361 - 3300668
Alignment:
| Q |
8 |
ttggagtttgaggcaacataaccacgcttgagatctttaacagcaacattcttaacattaaatcccacattgtcaccaggaagagcctcagtgagagctt |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3300361 |
ttggagtttgaggcaacataaccacgcttgagatccttaacagcaacgttcttaacattaaatcccacattgtcaccaggaagagcctcagtgagagctt |
3300460 |
T |
|
| Q |
108 |
catgatgcatctccacagacttcacttcagttgtcagtccagtaggggcaaaagtgacaaccattccaggttttatgacaccagtctcgacacgccccac |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3300461 |
catgatgcatctccacagacttcacttcagttgtcagtccagtaggggcaaaagtgacaaccattccaggttttatgacaccagtctcgacacgccccac |
3300560 |
T |
|
| Q |
208 |
aggcacagtcccaattcctccaatcttgtagacatcctgaagcggtagacggaggggcttgtctgatggcctcttaggctcgttgatttggtcaagagcc |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3300561 |
aggcacagtcccaattcctccaatcttgtagacatcctgaagcggtagacggaggggcttgtctgatggcctcttaggctcgttgatttggtcaagagcc |
3300660 |
T |
|
| Q |
308 |
tcaagaag |
315 |
Q |
| |
|
|||||||| |
|
|
| T |
3300661 |
tcaagaag |
3300668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 8 - 315
Target Start/End: Original strand, 43044627 - 43044934
Alignment:
| Q |
8 |
ttggagtttgaggcaacataaccacgcttgagatctttaacagcaacattcttaacattaaatcccacattgtcaccaggaagagcctcagtgagagctt |
107 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
43044627 |
ttggagtttgaggcaacatacccacgcttgagatccttaacagcaacattcttgacattaaatcccacattgtcaccaggaagggcctctgtgagagctt |
43044726 |
T |
|
| Q |
108 |
catgatgcatctccacagacttcacttcagttgtcagtccagtaggggcaaaagtgacaaccattccaggttttatgacaccagtctcgacacgccccac |
207 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43044727 |
catgatgcatctccacggacttgacttcagttgtcagtccagtaggggcaaaagtgacaaccattccaggttttatgacaccagtctcgacacgccccac |
43044826 |
T |
|
| Q |
208 |
aggcacagtcccaattcctccaatcttgtagacatcctgaagcggtagacggaggggcttgtctgatggcctcttaggctcgttgatttggtcaagagcc |
307 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||| |||||||||||||| ||| |
|
|
| T |
43044827 |
aggcacagttccaattcctccaatcttgtagacatcctgaagtggtagtcggaggggcttgtctgaaggcctcttaggctcattgatttggtcaagggcc |
43044926 |
T |
|
| Q |
308 |
tcaagaag |
315 |
Q |
| |
|
|||||||| |
|
|
| T |
43044927 |
tcaagaag |
43044934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 8 - 315
Target Start/End: Complemental strand, 43067364 - 43067057
Alignment:
| Q |
8 |
ttggagtttgaggcaacataaccacgcttgagatctttaacagcaacattcttaacattaaatcccacattgtcaccaggaagagcctcagtgagagctt |
107 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
43067364 |
ttggagtttgaggcaacatacccacgcttgagatccttaacagcaacattcttgacattaaatcccacattgtcaccaggaagggcctctgtgagagctt |
43067265 |
T |
|
| Q |
108 |
catgatgcatctccacagacttcacttcagttgtcagtccagtaggggcaaaagtgacaaccattccaggttttatgacaccagtctcgacacgccccac |
207 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43067264 |
catgatgcatctccacggacttgacttcagttgtcagtccagtaggggcaaaagtgacaaccattccaggttttatgacaccagtctcgacacgccccac |
43067165 |
T |
|
| Q |
208 |
aggcacagtcccaattcctccaatcttgtagacatcctgaagcggtagacggaggggcttgtctgatggcctcttaggctcgttgatttggtcaagagcc |
307 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||| |
|
|
| T |
43067164 |
aggcacagttccaattcctccaatcttgtagacatcttgaagtggtagtcggaggggcttgtctgaaggcctcttaggctcgttgatttggtcaagggcc |
43067065 |
T |
|
| Q |
308 |
tcaagaag |
315 |
Q |
| |
|
|||||||| |
|
|
| T |
43067064 |
tcaagaag |
43067057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 8 - 315
Target Start/End: Original strand, 43083471 - 43083778
Alignment:
| Q |
8 |
ttggagtttgaggcaacataaccacgcttgagatctttaacagcaacattcttaacattaaatcccacattgtcaccaggaagagcctcagtgagagctt |
107 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
43083471 |
ttggagtttgaggcaacatacccacgcttgagatccttaacagcaacattcttgacattaaatcccacattgtcaccaggaagggcctctgtgagagctt |
43083570 |
T |
|
| Q |
108 |
catgatgcatctccacagacttcacttcagttgtcagtccagtaggggcaaaagtgacaaccattccaggttttatgacaccagtctcgacacgccccac |
207 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43083571 |
catgatgcatctccacagacttgacttcagttgtcagtccagtaggggcaaaagtgataaccattccaggttttatgacaccagtctcgacacgccccac |
43083670 |
T |
|
| Q |
208 |
aggcacagtcccaattcctccaatcttgtagacatcctgaagcggtagacggaggggcttgtctgatggcctcttaggctcgttgatttggtcaagagcc |
307 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||| |
|
|
| T |
43083671 |
aggcacagttccaattcctccaatcttgtagacatcttgaagtggtagtcggaggggcttgtctgaaggcctcttaggctcgttgatttggtcaagtgcc |
43083770 |
T |
|
| Q |
308 |
tcaagaag |
315 |
Q |
| |
|
|||||||| |
|
|
| T |
43083771 |
tcaagaag |
43083778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 10 - 315
Target Start/End: Complemental strand, 45984344 - 45984042
Alignment:
| Q |
10 |
ggagtttgaggcaacataaccacgcttgagatctttaacagcaacattcttaacattaaatcccacattgtcaccaggaagagcctcagtgagagcttca |
109 |
Q |
| |
|
||||||||||||||||||||| |||||||||| || ||||||| || |||||||||||||||| ||||||||||||| |||||| || ||||||| |
|
|
| T |
45984344 |
ggagtttgaggcaacataaccttgcttgagatccctagcagcaacgtt---aacattaaatcccacaatgtcaccaggaagggcctcaccgatagcttca |
45984248 |
T |
|
| Q |
110 |
tgatgcatctccacagacttcacttcagttgtcagtccagtaggggcaaaagtgacaaccattccaggttttatgacaccagtctcgacacgccccacag |
209 |
Q |
| |
|
|| ||||||||||||||||||||||||| | ||| ||||| | ||||||||| | ||||||||||| || | | ||||||||| ||||| ||||||| |
|
|
| T |
45984247 |
tggtgcatctccacagacttcacttcagcttgcagcccagttgcggcaaaagtcagcaccattccagggttcaaggaaccagtctcaacacgtcccacag |
45984148 |
T |
|
| Q |
210 |
gcacagtcccaattcctccaatcttgtagacatcctgaagcggtagacggaggggcttgtctgatggcctcttaggctcgttgatttggtcaagagcctc |
309 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||||||| |||| | ||| |||||||||||||||||| ||||||||||||||||||||| ||| || |
|
|
| T |
45984147 |
gcacagttccgattcctccaatcttgtagacatcctgaagtggtattctgagaggcttgtctgatggcctcataggctcgttgatttggtcaatagcttc |
45984048 |
T |
|
| Q |
310 |
aagaag |
315 |
Q |
| |
|
|||||| |
|
|
| T |
45984047 |
aagaag |
45984042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 8 - 315
Target Start/End: Complemental strand, 38138513 - 38138206
Alignment:
| Q |
8 |
ttggagtttgaggcaacataaccacgcttgagatctttaacagcaacattcttaacattaaatcccacattgtcaccaggaagagcctcagtgagagctt |
107 |
Q |
| |
|
||||||| |||||||||||| || ||| |||||| ||||||| ||| || |||||||||||||||| ||||||||||||| |||||| |||| || |
|
|
| T |
38138513 |
ttggagtctgaggcaacatagcctcgccggagatccttaacagacccatgctgaacattaaatcccacaatgtcaccaggaagggcctcattgagctttt |
38138414 |
T |
|
| Q |
108 |
catgatgcatctccacagacttcacttcagttgtcagtccagtaggggcaaaagtgacaaccattccaggttttatgacaccagtctcgacacgccccac |
207 |
Q |
| |
|
|||| |||||||||| ||| ||||| |||| |||| ||||| ||||||||||| || ||||||| ||||| | |||||| |||| || || ||||| |
|
|
| T |
38138413 |
catggtgcatctccatagaattcacaagagttttcagcccagttggggcaaaagtcaccgccattcctggtttcaagacaccgctctcaacccgtcccac |
38138314 |
T |
|
| Q |
208 |
aggcacagtcccaattcctccaatcttgtagacatcctgaagcggtagacggaggggcttgtctgatggcctcttaggctcgttgatttggtcaagagcc |
307 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||| |||| ||||| ||||||||| || ||||||||||||| ||||||||||||||||| |
|
|
| T |
38138313 |
aggcacagttccaattcctccaatcttgtagacatcctgaagtggtaatcggagaggcttgtctaatagcctcttaggctccttgatttggtcaagagct |
38138214 |
T |
|
| Q |
308 |
tcaagaag |
315 |
Q |
| |
|
|||||||| |
|
|
| T |
38138213 |
tcaagaag |
38138206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 8 - 254
Target Start/End: Complemental strand, 7891605 - 7891359
Alignment:
| Q |
8 |
ttggagtttgaggcaacataaccacgcttgagatctttaacagcaacattcttaacattaaatcccacattgtcaccaggaagagcctcagtgagagctt |
107 |
Q |
| |
|
|||||||||||||||||||| || ||| ||||||| ||| ||| |||||| |||| |||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
7891605 |
ttggagtttgaggcaacatagcctcgcctgagatccttagcagacacattcgtaacgttaaatcccacaatgtcaccaggaagagcccgagtgagagctt |
7891506 |
T |
|
| Q |
108 |
catgatgcatctccacagacttcacttcagttgtcagtccagtaggggcaaaagtgacaaccattccaggttttatgacaccagtctcgacacgccccac |
207 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| || ||||| ||||||||||| | |||||||||||||| | || ||||| ||| || || ||||| |
|
|
| T |
7891505 |
catggtgcatctccacagacttcacttcagtttggagcccagttggggcaaaagtcagcaccattccaggtttcaagataccagactcaacgcgtcccac |
7891406 |
T |
|
| Q |
208 |
aggcacagtcccaattcctccaatcttgtagacatcctgaagcggta |
254 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
7891405 |
aggcacaattccaattcctccaatcttgtagacatcttgaagtggta |
7891359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 8 - 300
Target Start/End: Complemental strand, 40035346 - 40035054
Alignment:
| Q |
8 |
ttggagtttgaggcaacataaccacgcttgagatctttaacagcaacattcttaacattaaatcccacattgtcaccaggaagagcctcagtgagagctt |
107 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| ||||||| | ||||||||||||||||||||| ||||||||||||| ||||| ||||| ||| |
|
|
| T |
40035346 |
ttggagtttgaggcaacataaccttgcttgagatccttaacagacatgttcttaacattaaatcccacaatgtcaccaggaagggcctcgatgagacctt |
40035247 |
T |
|
| Q |
108 |
catgatgcatctccacagacttcacttcagttgtcagtccagtaggggcaaaagtgacaaccattccaggttttatgacaccagtctcgacacgccccac |
207 |
Q |
| |
|
| || ||||||||||||||| ||||||||||| || ||||| ||||||||||| ||| ||||||| ||||| | |||||||||| ||||| || || |
|
|
| T |
40035246 |
cgtggtgcatctccacagacctcacttcagtttgcaccccagttggggcaaaagtcacagccattcctggtttcaagacaccagtcataacacgaccaac |
40035147 |
T |
|
| Q |
208 |
aggcacagtcccaattcctccaatcttgtagacatcctgaagcggtagacggaggggcttgtctgatggcctcttaggctcgttgatttggtc |
300 |
Q |
| |
|
|||||| ||||||||||||||| |||| ||| ||| | |||| ||||| ||||| |||||||||||||| || | ||||||||||| |
|
|
| T |
40035146 |
aggcacgactccaattcctccaatcatgtaaacagactggattggtaatcggagaggcttatctgatggcctcttcggtactttgatttggtc |
40035054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 114 - 315
Target Start/End: Complemental strand, 43077105 - 43076912
Alignment:
| Q |
114 |
gcatctccacagacttcacttcagttgtcagtccagtaggggcaaaagtgacaaccattccaggttttatgacaccagtctcgacacgccccacaggcac |
213 |
Q |
| |
|
|||||||||||||| | |||| || |||||||||||||||||||||||| || |||||||||||||| | |||||||||||| ||||| ||||||| || |
|
|
| T |
43077105 |
gcatctccacagacgtgactttagctgtcagtccagtaggggcaaaagtcaccaccattccaggtttcaagacaccagtctcaacacgtgccacaggtac |
43077006 |
T |
|
| Q |
214 |
agtcccaattcctccaatcttgtagacatcctgaagcggtagacggaggggcttgtctgatggcctcttaggctcgttgatttggtcaagagcctcaaga |
313 |
Q |
| |
|
||| |||||||||| || ||||||||||| |||| |||||| |||||||||| ||||||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
43077005 |
agttccaattcctctaaacttgtagacat--------tgtagtcggaggtgcttgtctgaaggcctcttaggctcgttgatttggtcaagggccccaaga |
43076914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 152 - 311
Target Start/End: Original strand, 50912150 - 50912309
Alignment:
| Q |
152 |
ggggcaaaagtgacaaccattccaggttttatgacaccagtctcgacacgccccacaggcacagtcccaattcctccaatcttgtagacatcctgaagcg |
251 |
Q |
| |
|
||||||||||| || ||||||||| |||| | |||||| ||||| | ||| |||||||| ||| | |||||| ||||||||||||||||| ||||||| | |
|
|
| T |
50912150 |
ggggcaaaagtcaccaccattccacgtttcaagacaccggtctcaatacgtcccacaggtacaattccaatttctccaatcttgtagacaacctgaagtg |
50912249 |
T |
|
| Q |
252 |
gtagacggaggggcttgtctgatggcctcttaggctcgttgatttggtcaagagcctcaa |
311 |
Q |
| |
|
||| ||||| ||| ||| |||||| || |||||||| |||||||| |||||||| |||| |
|
|
| T |
50912250 |
gtaatcggagaggcatgtgtgatggtctattaggctccttgatttgatcaagagcttcaa |
50912309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 8 - 108
Target Start/End: Original strand, 50912044 - 50912144
Alignment:
| Q |
8 |
ttggagtttgaggcaacataaccacgcttgagatctttaacagcaacattcttaacattaaatcccacattgtcaccaggaagagcctcagtgagagctt |
107 |
Q |
| |
|
|||||||||||||||| ||| || ||| |||||| ||| || |||||||||||||||||||||||| |||||||||||| |||||| ||||||||| |
|
|
| T |
50912044 |
ttggagtttgaggcaatatagcctcgccggagatccttagaagacacattcttaacattaaatcccacaatgtcaccaggaatggcctcaatgagagctt |
50912143 |
T |
|
| Q |
108 |
c |
108 |
Q |
| |
|
| |
|
|
| T |
50912144 |
c |
50912144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 43077240 - 43077173
Alignment:
| Q |
9 |
tggagtttgaggcaacataaccacgcttgagatctttaacagcaacattcttaacattaaatcccaca |
76 |
Q |
| |
|
||||||| ||||||||||| |||| ||||||||| |||||| |||| |||| ||||||||||| |||| |
|
|
| T |
43077240 |
tggagttagaggcaacatagccactcttgagatccttaacatcaacgttctcaacattaaatctcaca |
43077173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 8 - 315
Target Start/End: Original strand, 4231092 - 4231399
Alignment:
| Q |
8 |
ttggagtttgaggcaacataaccacgcttgagatctttaacagcaacattcttaacattaaatcccacattgtcaccaggaagagcctcagtgagagctt |
107 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||| || |
|
|
| T |
4231092 |
ttggtgtttgaggcaacataaccacgcttgagatccttgacagaaacattcttaacattaaatcccacattgtcaccgggaagtgcctcagtgagagatt |
4231191 |
T |
|
| Q |
108 |
catgatgcatctccacagacttcacttcagttgtcagtccagtaggggcaaaagtgacaaccattccaggttttatgacaccagtctcgacacgccccac |
207 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||||||||| || |||||||| || |||||||||||||| ||| ||||||||| ||||| ||||| |
|
|
| T |
4231192 |
catgatgcatctccacagacttgacttcagtttgcagtccagttggagcaaaagtcaccaccattccaggtttcatggtaccagtctcaacacgtcccac |
4231291 |
T |
|
| Q |
208 |
aggcacagtcccaattcctccaatcttgtagacatcctgaagcggtagacggaggggcttgtctgatggcctcttaggctcgttgatttggtcaagagcc |
307 |
Q |
| |
|
||| ||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
4231292 |
aggaacagttccaattcctccaatcttgtagacatcctgaagaggtagtcggaggggcttgtctgatggcctcttaggctcattgatttgatcaagagcc |
4231391 |
T |
|
| Q |
308 |
tcaagaag |
315 |
Q |
| |
|
|||||||| |
|
|
| T |
4231392 |
tcaagaag |
4231399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 19965208 - 19965127
Alignment:
| Q |
8 |
ttggagtttgaggcaacataaccacgcttgagatctttaacagcaacattcttaacattaaatcccacattgtcaccaggaa |
89 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||| ||| ||||||||| || |||| ||||||||| ||||||||||| |
|
|
| T |
19965208 |
ttggagtttgaggcaacataacctggctggagatccttagcagcaacatcctcgacatctaatcccacaaagtcaccaggaa |
19965127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 132; Significance: 1e-68; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 8 - 315
Target Start/End: Original strand, 4619316 - 4619623
Alignment:
| Q |
8 |
ttggagtttgaggcaacataaccacgcttgagatctttaacagcaacattcttaacattaaatcccacattgtcaccaggaagagcctcagtgagagctt |
107 |
Q |
| |
|
|||||||||||| ||||||| || |||||||||| | | ||| ||||||| |||||||||||||||||||||||||||||| |||||||||||| | |
|
|
| T |
4619316 |
ttggagtttgagacaacatagcctcgcttgagatgctcagcagacacattctcaacattaaatcccacattgtcaccaggaagggcctcagtgagatttg |
4619415 |
T |
|
| Q |
108 |
catgatgcatctccacagacttcacttcagttgtcagtccagtaggggcaaaagtgacaaccattccaggttttatgacaccagtctcgacacgccccac |
207 |
Q |
| |
|
||| | ||| | ||||||||| ||||||| | ||| ||| | ||||||||||| || | |||||||||||| | |||||| ||||| |||| ||||| |
|
|
| T |
4619416 |
tatggtccatttgcacagactttacttcagcttgcagcccaatcggggcaaaagtcaccatcattccaggtttcaagacaccggtctcaacacatcccac |
4619515 |
T |
|
| Q |
208 |
aggcacagtcccaattcctccaatcttgtagacatcctgaagcggtagacggaggggcttgtctgatggcctcttaggctcgttgatttggtcaagagcc |
307 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| |||| |||| ||||| ||||||| ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
4619516 |
aggcacagttccaattcctccaatcttgtagacatcccgaagtggtaatcggagaggcttgtttgatggcctattaggctcgttgatttggtcaagagct |
4619615 |
T |
|
| Q |
308 |
tcaagaag |
315 |
Q |
| |
|
|||||||| |
|
|
| T |
4619616 |
tcaagaag |
4619623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 10 - 315
Target Start/End: Original strand, 1846118 - 1846423
Alignment:
| Q |
10 |
ggagtttgaggcaacataaccacgcttgagatctttaacagcaacattcttaacattaaatcccacattgtcaccaggaagagcctcagtgagagcttca |
109 |
Q |
| |
|
||||| |||||||||||| || ||| ||||||| ||| ||| |||||| ||||||||||||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
1846118 |
ggagtgtgaggcaacatagcctcgcctgagatccttagcagacacattcgtaacattaaatcccacaatgtcaccaggaagagcccgggtgagagcttca |
1846217 |
T |
|
| Q |
110 |
tgatgcatctccacagacttcacttcagttgtcagtccagtaggggcaaaagtgacaaccattccaggttttatgacaccagtctcgacacgccccacag |
209 |
Q |
| |
|
|| ||||||||||||||||||||||||||| || ||||| ||||||||||| | |||||||||||||| | || ||||| ||| || || ||||||| |
|
|
| T |
1846218 |
tggtgcatctccacagacttcacttcagtttggagcccagttggggcaaaagtcagcaccattccaggtttcaagataccagactcaacgcgtcccacag |
1846317 |
T |
|
| Q |
210 |
gcacagtcccaattcctccaatcttgtagacatcctgaagcggtagacggaggggcttgtctgatggcctcttaggctcgttgatttggtcaagagcctc |
309 |
Q |
| |
|
||||| | |||||||||||||||||||||||||| ||||| |||| ||||| ||| || | | |||||||||| |||||||||||||||| || |
|
|
| T |
1846318 |
gcacaattccaattcctccaatcttgtagacatcttgaagtggtaatcggagaggcctgaatattaacctcttaggccttctgatttggtcaagagcttc |
1846417 |
T |
|
| Q |
310 |
aagaag |
315 |
Q |
| |
|
|||||| |
|
|
| T |
1846418 |
aagaag |
1846423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 187 - 315
Target Start/End: Complemental strand, 4787884 - 4787756
Alignment:
| Q |
187 |
accagtctcgacacgccccacaggcacagtcccaattcctccaatcttgtagacatcctgaagcggtagacggaggggcttgtctgatggcctcttaggc |
286 |
Q |
| |
|
||||||||||||||| ||||||| |||| || ||||||||||||||||||| |||| || ||||| ||||| ||| | |||||||||||||||| |
|
|
| T |
4787884 |
accagtctcgacacgtcccacagacacaactccgattcctccaatcttgtagaaatccataattggtagtcggagaggcaaatttgatggcctcttaggc |
4787785 |
T |
|
| Q |
287 |
tcgttgatttggtcaagagcctcaagaag |
315 |
Q |
| |
|
|| || ||| ||||| ||| |||||||| |
|
|
| T |
4787784 |
tctttcattctgtcaatagcttcaagaag |
4787756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 8 - 312
Target Start/End: Complemental strand, 7529912 - 7529608
Alignment:
| Q |
8 |
ttggagtttgaggcaacataaccacgcttgagatctttaacagcaacattcttaacattaaatcccacattgtcaccaggaagagcctcagtgagagctt |
107 |
Q |
| |
|
|||||||| || ||||| |||||||||||||||| || |||||||||||||||||||| ||||| |||||||| || |||||||| ||||||||||| | |
|
|
| T |
7529912 |
ttggagttggatgcaacgaaaccacgcttgagatccttcacagcaacattcttaacattgaatccgacattgtctcctggaagagcttcagtgagagcct |
7529813 |
T |
|
| Q |
108 |
catgatgcatctccacagacttcacttcagttgtcagtccagtaggggcaaaagtgacaaccattccaggttttatgacaccagtctcgacacgccccac |
207 |
Q |
| |
|
| || |||||||| |||||||| ||||||||||| || ||||| || ||||||| |||||||| || || || | | ||| ||||| ||||| || || |
|
|
| T |
7529812 |
cgtggtgcatctcaacagacttaacttcagttgttagaccagtgggtccaaaagtcacaaccataccgggcttcacaataccggtctcaacacgtccgac |
7529713 |
T |
|
| Q |
208 |
aggcacagtcccaattcctccaatcttgtagacatcctgaagcggtagacggaggggcttgtctgatggcctcttaggctcgttgatttggtcaagagcc |
307 |
Q |
| |
|
|||||||| ||||| || ||||||||||| ||||| || | || || | |||||||||||||| || ||||| ||||||||||| |||||||||||| |
|
|
| T |
7529712 |
tggcacagttccaataccaccaatcttgtaaacatcttgcaatggaagcctgaggggcttgtctgtgggtctcttgggctcgttgatctggtcaagagcc |
7529613 |
T |
|
| Q |
308 |
tcaag |
312 |
Q |
| |
|
||||| |
|
|
| T |
7529612 |
tcaag |
7529608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 8 - 312
Target Start/End: Complemental strand, 7520375 - 7520071
Alignment:
| Q |
8 |
ttggagtttgaggcaacataaccacgcttgagatctttaacagcaacattcttaacattaaatcccacattgtcaccaggaagagcctcagtgagagctt |
107 |
Q |
| |
|
|||||||| || ||||| |||||||||||||||| || || ||||||||||||||||| ||||| |||||||| || |||||||| ||||||||||| | |
|
|
| T |
7520375 |
ttggagttggatgcaacgaaaccacgcttgagatccttcacggcaacattcttaacattgaatccaacattgtctcctggaagagcttcagtgagagcct |
7520276 |
T |
|
| Q |
108 |
catgatgcatctccacagacttcacttcagttgtcagtccagtaggggcaaaagtgacaaccattccaggttttatgacaccagtctcgacacgccccac |
207 |
Q |
| |
|
| || |||||||| |||||||| ||||||||||||| ||||| || ||||||| |||||||| || || || | | ||| ||||| ||||| || || |
|
|
| T |
7520275 |
cgtggtgcatctcaacagacttaacttcagttgtcaaaccagtgggtccaaaagtcacaaccataccgggcttcacaataccggtctcaacacgtccaac |
7520176 |
T |
|
| Q |
208 |
aggcacagtcccaattcctccaatcttgtagacatcctgaagcggtagacggaggggcttgtctgatggcctcttaggctcgttgatttggtcaagagcc |
307 |
Q |
| |
|
|||||||| ||||| || ||||||||||| ||||| || | || || | |||||||||||||| || ||||| ||||||||||| |||||||||||| |
|
|
| T |
7520175 |
tggcacagttccaataccaccaatcttgtaaacatcttgcaatggaagcctgaggggcttgtctgtgggtctcttgggctcgttgatctggtcaagagcc |
7520076 |
T |
|
| Q |
308 |
tcaag |
312 |
Q |
| |
|
||||| |
|
|
| T |
7520075 |
tcaag |
7520071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 8 - 315
Target Start/End: Original strand, 16348774 - 16349081
Alignment:
| Q |
8 |
ttggagtttgaggcaacataaccacgcttgagatctttaacagcaacattcttaacattaaatcccacattgtcaccaggaagagcctcagtgagagctt |
107 |
Q |
| |
|
|||||||||||||||||||| || || |||||| | | ||| ||||||| |||| ||||| |||||| ||||||||||| ||||| | ||| ||| |
|
|
| T |
16348774 |
ttggagtttgaggcaacatagcctcggctgagatgtgcatcagacacattctcaacagcaaatctcacattatcaccaggaagggcctcggaaagatctt |
16348873 |
T |
|
| Q |
108 |
catgatgcatctccacagacttcacttcagttgtcagtccagtaggggcaaaagtgacaaccattccaggttttatgacaccagtctcgacacgccccac |
207 |
Q |
| |
|
|||| | ||||| ||||||| |||| ||| | | | ||| | |||| |||||| || |||||||||||||| | |||||||||| ||||| || | |
|
|
| T |
16348874 |
catggtccatcttcacagacgtcacctcaccttgccggccatttggggaaaaagtcaccaccattccaggtttcaagacaccagtcctgacacatcctgc |
16348973 |
T |
|
| Q |
208 |
aggcacagtcccaattcctccaatcttgtagacatcctgaagcggtagacggaggggcttgtctgatggcctcttaggctcgttgatttggtcaagagcc |
307 |
Q |
| |
|
|| || || |||||||||||||||||||||||| ||||||| |||| ||||| |||||||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
16348974 |
agccaaagctccaattcctccaatcttgtagacaccctgaagtggtaatcggagaggcttgtctgatagcctcttaggctcgttgattcggtcaagagct |
16349073 |
T |
|
| Q |
308 |
tcaagaag |
315 |
Q |
| |
|
|||||||| |
|
|
| T |
16349074 |
tcaagaag |
16349081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 84; Significance: 6e-40; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 68 - 315
Target Start/End: Original strand, 34690533 - 34690780
Alignment:
| Q |
68 |
aatcccacattgtcaccaggaagagcctcagtgagagcttcatgatgcatctccacagacttcacttcagttgtcagtccagtaggggcaaaagtgacaa |
167 |
Q |
| |
|
||||||||| | ||||||||||| |||||| ||| |||||||||||||| ||||||||| ||| ||| | ||| ||||| ||||||||||| | | |
|
|
| T |
34690533 |
aatcccacaatatcaccaggaagggcctcactgatgttttcatgatgcatctgcacagacttaactccagattgcagcccagttggggcaaaagtcagca |
34690632 |
T |
|
| Q |
168 |
ccattccaggttttatgacaccagtctcgacacgccccacaggcacagtcccaattcctccaatcttgtagacatcctgaagcggtagacggaggggctt |
267 |
Q |
| |
|
||||||||||||| | ||||||||||| ||||| || ||||| ||||| |||| ||||||||||||||||||| ||||| ||||| | | ||||| |
|
|
| T |
34690633 |
ccattccaggtttcaacacaccagtctcaacacgtccgacaggtacagttccaacacctccaatcttgtagacatgttgaagtggtagtctcaaaggctt |
34690732 |
T |
|
| Q |
268 |
gtctgatggcctcttaggctcgttgatttggtcaagagcctcaagaag |
315 |
Q |
| |
|
| |||| |||||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
34690733 |
gcctgaaggcctcttaggctcgtcgatttggtcaagagcttcaagaag |
34690780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 68 - 315
Target Start/End: Original strand, 34712945 - 34713192
Alignment:
| Q |
68 |
aatcccacattgtcaccaggaagagcctcagtgagagcttcatgatgcatctccacagacttcacttcagttgtcagtccagtaggggcaaaagtgacaa |
167 |
Q |
| |
|
||||||||| | ||||||||||| |||||| ||| |||||||||||||| ||||||||| ||| ||| | ||| ||||| ||||||||||| | | |
|
|
| T |
34712945 |
aatcccacaatatcaccaggaagggcctcactgatgttttcatgatgcatctgcacagacttaactccagattgcagcccagttggggcaaaagtcagca |
34713044 |
T |
|
| Q |
168 |
ccattccaggttttatgacaccagtctcgacacgccccacaggcacagtcccaattcctccaatcttgtagacatcctgaagcggtagacggaggggctt |
267 |
Q |
| |
|
||||||||||||| | ||||||||||| ||||| || ||||| ||||| |||| ||||||||||||||||||| ||||| ||||| | | ||||| |
|
|
| T |
34713045 |
ccattccaggtttcaacacaccagtctcaacacgtccgacaggtacagttccaacacctccaatcttgtagacatgttgaagtggtagtctcaaaggctt |
34713144 |
T |
|
| Q |
268 |
gtctgatggcctcttaggctcgttgatttggtcaagagcctcaagaag |
315 |
Q |
| |
|
| |||| |||||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
34713145 |
gcctgaaggcctcttaggctcgtcgatttggtcaagagcttcaagaag |
34713192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 148 - 311
Target Start/End: Original strand, 16231954 - 16232117
Alignment:
| Q |
148 |
agtaggggcaaaagtgacaaccattccaggttttatgacaccagtctcgacacgccccacaggcacagtcccaattcctccaatcttgtagacatcctga |
247 |
Q |
| |
|
||||||||||||||| | |||||||| || |||| || |||||||| ||||| |||||||| ||||| ||||| ||||||||||||||||||| |||| |
|
|
| T |
16231954 |
agtaggggcaaaagtcagtaccattccgggctttaataccccagtctcaacacgtcccacaggtacagttccaatacctccaatcttgtagacatgctga |
16232053 |
T |
|
| Q |
248 |
agcggtagacggaggggcttgtctgatggcctcttaggctcgttgatttggtcaagagcctcaa |
311 |
Q |
| |
|
|| || || || || |||||| || ||||||||||||||| |||||||||||| ||| |||| |
|
|
| T |
16232054 |
aggggaagtcgcagaggcttgccttcgggcctcttaggctcgctgatttggtcaatagcttcaa |
16232117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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