View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4833_high_12 (Length: 306)
Name: NF4833_high_12
Description: NF4833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4833_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 2 - 290
Target Start/End: Original strand, 32440016 - 32440306
Alignment:
| Q |
2 |
cattaaactctttttatttatacataaaagacaatttaatattagttgttattatagatattaattacac--ccaacttgtctgaatatttacctgaaat |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||| ||| |||||| |
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| T |
32440016 |
cattaaactctttttatttatacataaaagacaatttaatattagttgttattatagatattaattacaccgccaacttatgtgaatatgtacgtgaaat |
32440115 |
T |
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| Q |
100 |
atacataacgaatgtttaaactatggaaggacactaatnnnnnnngactttgtgtacaattattttcnnnnnnngatattgtaattttagtttgttatgt |
199 |
Q |
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|||||||| ||||||||||||||||||| ||||||| | |||||||||||||| | ||||| ||||||||||||||||||||| |||| |
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| T |
32440116 |
atacataaggaatgtttaaactatggaatgacactagtaaagaaagactttgtgtacaacttttttctttttttgatattgtaattttagtttgtcatgt |
32440215 |
T |
|
| Q |
200 |
tgtaagagtctaccacattttgtatgacagagccttcgttgacattgatgttgttgttaaatgtggaaataaatgaagtttgctccctctc |
290 |
Q |
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|||||||||||| |||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32440216 |
tgtaagagtctagcacattttgtgtgacaaagccttcattgacattgatgttgttgttaaatgtggaaataaatgaagtttgctccctctc |
32440306 |
T |
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