View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4833_high_1_N (Length: 479)
Name: NF4833_high_1_N
Description: NF4833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4833_high_1_N |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 398; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 17 - 479
Target Start/End: Complemental strand, 37160148 - 37159683
Alignment:
| Q |
17 |
tactttcaaacgtttttt--ctgatagaccctttagactgtcataaccttgtgctttgtttcatgattcccatttccgtgag-caggaccacagatttgg |
113 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||| |
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| T |
37160148 |
tactttcaaacgttttttttctgatagaccctttagactgtcataaccttgtgctttgtttcatgattcccatttccgtaaatcaggtccacagatttgg |
37160049 |
T |
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| Q |
114 |
tttgtacatcaattaaaacaaaaacagttacaacatgtgtttgtgtattgnnnnnnncaaaacacagttacacttacacatgtcactaactcacccttgt |
213 |
Q |
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| T |
37160048 |
tttgtacatcaattaaaacaaaaacagttacaacatgtgtttgtgtattgaaaaaaacaaaacacagttacacttaaacatgtcactaactcacccttgt |
37159949 |
T |
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| Q |
214 |
aatgaaggattgaagaaattgtttgaggatccatctttatgtatgtaaaaaatacacaaaattacttacaacttgaaacttacaagttacagtttatttt |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37159948 |
aatgaaggattgaagaaattgtttgaggatccatctttatgtatgtaaaaaatacacaaaattacttacaacttgaaacttacaagttacagtttatttt |
37159849 |
T |
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| Q |
314 |
ggatttttaggtgaagcttattaaagaggaatttggatatgacgatggattcaactataataaggaatcagactttgatgccgctttaagcaagtagtaa |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
37159848 |
ggatttttaggtgaagcttattaaagaggaatttggatatgacgacggattcaactacaataaggaatcagactttgatgccgctttaagcaagtagtaa |
37159749 |
T |
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| Q |
414 |
tctgtcttttctctttatcaatgcctttcctttacaaatattgcaatataaatgcaaggccaaccc |
479 |
Q |
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| T |
37159748 |
tctgtcttttctctttatcaatgcctttcctttacaaatattgctatataaatgcaaggccaaccc |
37159683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 291 - 409
Target Start/End: Complemental strand, 37153489 - 37153371
Alignment:
| Q |
291 |
acttacaagttacagtttattttggatttttaggtgaagcttattaaagaggaatttggatatgacgatggattcaactataataaggaatcagactttg |
390 |
Q |
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|||||||||||||| ||| ||| | ||||||||| || || |||||||||||||||||||||||||| || |||||||||||| ||||||||| |||| |
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| T |
37153489 |
acttacaagttacactttttttggtttttttaggtcaacctcattaaagaggaatttggatatgacgacggtttcaactataatgcggaatcagattttg |
37153390 |
T |
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| Q |
391 |
atgccgctttaagcaagta |
409 |
Q |
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| T |
37153389 |
acgccgctttaagcaagta |
37153371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 322 - 414
Target Start/End: Complemental strand, 37147987 - 37147895
Alignment:
| Q |
322 |
aggtgaagcttattaaagaggaatttggatatgacgatggattcaactataataaggaatcagactttgatgccgctttaagcaagtagtaat |
414 |
Q |
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|||||||||| ||||||||| ||||||||||||| |||||||||||||| |||| |||||||| |||||||| ||||||||||||| ||||| |
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| T |
37147987 |
aggtgaagctcattaaagagaaatttggatatgatgatggattcaactacaatatagaatcagattttgatgctgctttaagcaagtcgtaat |
37147895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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