View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4833_high_3 (Length: 377)
Name: NF4833_high_3
Description: NF4833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4833_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 334; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 359
Target Start/End: Complemental strand, 24618033 - 24617675
Alignment:
| Q |
1 |
acatcaactcacataacctagtggtgtctatccaaacgaatttgtcatcatacgacttttgttccttgtttgagtggccttgtacgtgatcaaatcgaca |
100 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24618033 |
acatcaactcacataacctagtggcgtctatccaaacgaatttgtcatcatacgacttttgttccttgtttgagtggccttgtacgtgatcaaatcgaca |
24617934 |
T |
|
| Q |
101 |
ataatcaagaattaaggttaacattgcaggagtgacttgttgaggaagacatattggagaagtcttggaagatcctttttgtaatactaatacttgcggc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24617933 |
ataatcaagaattaaggttaacattgcaggagtgacttgttgaggaagacatattggagaagtcttggaagatcctttttgtaatactaatacttgcggc |
24617834 |
T |
|
| Q |
201 |
tcgatttagaactttgttctccacatcacaagtagataagttaacagtatttgatcattacatgcctctcttttcaaatagaagtgtagatacttggttt |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24617833 |
tcgatttagaactttgttctccacatcacaagtagataagttaacagtatttgatcattacatgcctctcttttcaaatagaagtgtagatacttggttt |
24617734 |
T |
|
| Q |
301 |
gttatttttnnnnnnntaattaaaccttgtgaattttacattgaatcatgctgtgatga |
359 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24617733 |
gttatttttaaaaaaataattaaaccttgtgaattttacattgaatcatgctgtgatga |
24617675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 190 - 356
Target Start/End: Original strand, 24105876 - 24106041
Alignment:
| Q |
190 |
atacttgcggctcgatttagaactttgttctccacatcacaagtagataagttaacagtatttgatcattacatgcctctcttttcaaatagaagtgtag |
289 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |||||||||||||||| || |
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| T |
24105876 |
atacttgctgctcgatttagaactttgttctccacatcacaagtaga-aagttaggagtatttgatcattacatgcctcttttttcaaatagaagtgcag |
24105974 |
T |
|
| Q |
290 |
atacttggtttgttatttttnnnnnnntaattaaaccttgtgaattttacattgaatcatgctgtga |
356 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
24105975 |
atacttggtttgttattttaaaaaaaataattaaaccttgtgaattttacattgaatcaagctgtga |
24106041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 190 - 306
Target Start/End: Original strand, 24113288 - 24113410
Alignment:
| Q |
190 |
atacttgcggctcgatttagaactttgttctccacatcacaa---------gtagataagttaacagtatttgatcattacatgcctctcttttcaaata |
280 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||| ||||||||| |
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| T |
24113288 |
atacttgcggctcaatttagaactttgttctccacaccacaatgtatgtcagtagataagttagcagtatttgatcattacatgcctc---tttcaaata |
24113384 |
T |
|
| Q |
281 |
gaagtgtagatacttggtttgttatt |
306 |
Q |
| |
|
||||||||||||||| |||||||||| |
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|
| T |
24113385 |
gaagtgtagatacttagtttgttatt |
24113410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 122; Significance: 2e-62; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 4 - 177
Target Start/End: Complemental strand, 1343611 - 1343438
Alignment:
| Q |
4 |
tcaactcacataacctagtggtgtctatccaaacgaatttgtcatcatacgacttttgttccttgtttgagtggccttgtacgtgatcaaatcgacaata |
103 |
Q |
| |
|
|||||||||||||||||| || |||||||| ||||||||| |||||||| |||||| |||| ||||||||| | |||| ||||||| |||||||||||| |
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| T |
1343611 |
tcaactcacataacctaggggcgtctatcctaacgaatttctcatcataagactttcgttctttgtttgagcgtcctttcacgtgatgaaatcgacaata |
1343512 |
T |
|
| Q |
104 |
atcaagaattaaggttaacattgcaggagtgacttgttgaggaagacatattggagaagtcttggaagatcctt |
177 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1343511 |
atcaagaattaaggttaagattgcaggagtgacttgttgaggaagacatattggagaagtcttggaagatcctt |
1343438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 4 - 177
Target Start/End: Original strand, 1355976 - 1356149
Alignment:
| Q |
4 |
tcaactcacataacctagtggtgtctatccaaacgaatttgtcatcatacgacttttgttccttgtttgagtggccttgtacgtgatcaaatcgacaata |
103 |
Q |
| |
|
|||||||||||||||||| || |||||||| ||||||||| |||||||| |||||| |||| ||||||||| | |||| ||||||| |||||||||||| |
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|
| T |
1355976 |
tcaactcacataacctaggggcgtctatcctaacgaatttctcatcataagactttcgttctttgtttgagcgtcctttcacgtgatgaaatcgacaata |
1356075 |
T |
|
| Q |
104 |
atcaagaattaaggttaacattgcaggagtgacttgttgaggaagacatattggagaagtcttggaagatcctt |
177 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1356076 |
atcaagaattaaggttaagattgcaggagtgacttgttgaggaagacatattggagaagtcttggaagatcctt |
1356149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 28 - 176
Target Start/End: Complemental strand, 1360691 - 1360543
Alignment:
| Q |
28 |
ctatccaaacgaatttgtcatcatacgacttttgttccttgtttgagtggccttgtacgtgatcaaatcgacaataatcaagaattaaggttaacattgc |
127 |
Q |
| |
|
|||||| ||| |||| ||||||||| | ||| ||||||||||||||||||||||| ||||| |||| |||||||||||||||||||| | |||||||| |
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|
| T |
1360691 |
ctatcctaacaaattcctcatcatacaattttctttccttgtttgagtggccttgtatgtgatgaaatagacaataatcaagaattaagttcaacattgc |
1360592 |
T |
|
| Q |
128 |
aggagtgacttgttgaggaagacatattggagaagtcttggaagatcct |
176 |
Q |
| |
|
| || | |||| || |||||||||||||| |||| |||||||||||||| |
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|
| T |
1360591 |
aagacttactttttcaggaagacatattgcagaactcttggaagatcct |
1360543 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 26 - 175
Target Start/End: Complemental strand, 1350035 - 1349886
Alignment:
| Q |
26 |
gtctatccaaacgaatttgtcatcatacgacttttgttccttgtttgagtggccttgtacgtgatcaaatcgacaataatcaagaattaaggttaacatt |
125 |
Q |
| |
|
|||||||| ||| ||||| |||||||| | ||| ||||||||| ||||||||||||| ||||| |||| ||||||||||||||||| || | |||| | |
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|
| T |
1350035 |
gtctatcctaacaaatttcgcatcatacaattttctttccttgttggagtggccttgtatgtgatgaaattgacaataatcaagaattgagctcaacaat |
1349936 |
T |
|
| Q |
126 |
gcaggagtgacttgttgaggaagacatattggagaagtcttggaagatcc |
175 |
Q |
| |
|
| |||| | ||||||||||||||||||||||||||| ||||| ||||||| |
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|
| T |
1349935 |
gaaggacttacttgttgaggaagacatattggagaactcttgcaagatcc |
1349886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 64 - 171
Target Start/End: Complemental strand, 11366812 - 11366705
Alignment:
| Q |
64 |
ccttgtttgagtggccttgtacgtgatcaaatcgacaataatcaagaattaaggttaacattgcaggagtgacttgttgaggaagacatattggagaagt |
163 |
Q |
| |
|
||||||||||| ||||| |||| |||| ||||||||| ||||||||||||||| | | |||||||||| ||||||||||||||||||||| || | || | |
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|
| T |
11366812 |
ccttgtttgagcggcctagtacttgatgaaatcgacagtaatcaagaattaagctcagcattgcaggactgacttgttgaggaagacatactgcacaatt |
11366713 |
T |
|
| Q |
164 |
cttggaag |
171 |
Q |
| |
|
|||||||| |
|
|
| T |
11366712 |
cttggaag |
11366705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 8 - 116
Target Start/End: Complemental strand, 1353424 - 1353313
Alignment:
| Q |
8 |
ctcacataacctagtggtgtctatccaaacgaatttgtcatcatacgacttttgttccttg---tttgagtggccttgtacgtgatcaaatcgacaataa |
104 |
Q |
| |
|
|||||||| | ||||||||| ||||| ||| |||| ||| ||||||||||| |||| ||| ||||| |||||| |||||||| ||||||||||||| |
|
|
| T |
1353424 |
ctcacatagcttagtggtgtttatcctaacagatttctcaacatacgactttcgttctttgacgtttgaacggccttttacgtgatgaaatcgacaataa |
1353325 |
T |
|
| Q |
105 |
tcaagaattaag |
116 |
Q |
| |
|
|||||||||||| |
|
|
| T |
1353324 |
tcaagaattaag |
1353313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 24 - 175
Target Start/End: Original strand, 43365059 - 43365210
Alignment:
| Q |
24 |
gtgtctatccaaacgaatttgtcatcatacgacttttgttccttgtttgagtggccttgtacgtgatcaaatcgacaataatcaagaattaaggttaaca |
123 |
Q |
| |
|
||||||||| |||||| | |||||||| |||||| |||||||||||||| ||||| || | |||| |||||||||||||| |||||| ||| | ||| |
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|
| T |
43365059 |
gtgtctatcttaacgaaactatcatcataggactttcgttccttgtttgagcggcctggtgcttgatgaaatcgacaataattaagaatcaagctccaca |
43365158 |
T |
|
| Q |
124 |
ttgcaggagtgacttgttgaggaagacatattggagaagtcttggaagatcc |
175 |
Q |
| |
|
||| || | |||| |||||||||||||||| || | || ||||||||||||| |
|
|
| T |
43365159 |
ttggagaactgacctgttgaggaagacatactgcacaattcttggaagatcc |
43365210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 36 - 176
Target Start/End: Original strand, 43369219 - 43369359
Alignment:
| Q |
36 |
acgaatttgtcatcatacgacttttgttccttgtttgagtggccttgtacgtgatcaaatcgacaataatcaagaattaaggttaacattgcaggagtga |
135 |
Q |
| |
|
||||| || |||||||||| |||||||||||||| |||| ||||| || | || |||||||||||||| |||||||||| | |||||| || | | | |
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|
| T |
43369219 |
acgaaattatcatcatacgccttttgttccttgtctgagcggcctggtgctagacgaaatcgacaataattaagaattaagctccacattgaagaactaa |
43369318 |
T |
|
| Q |
136 |
cttgttgaggaagacatattggagaagtcttggaagatcct |
176 |
Q |
| |
|
| ||||||||||||||| ||| | || |||||||||||||| |
|
|
| T |
43369319 |
cctgttgaggaagacatgttgcacaattcttggaagatcct |
43369359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 64 - 175
Target Start/End: Original strand, 29389250 - 29389361
Alignment:
| Q |
64 |
ccttgtttgagtggccttgtacgtgatcaaatcgacaataatcaagaattaaggttaacattgcaggagtgacttgttgaggaagacatattggagaagt |
163 |
Q |
| |
|
||||||||||| ||||| |||| |||| ||| |||||||||||||||| |||| | ||||| ||||||| ||||| || |||||||||||| | | || | |
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|
| T |
29389250 |
ccttgtttgagcggcctggtacttgatgaaaacgacaataatcaagaactaagctcaacatagcaggagagactttttcaggaagacatatcgcacaatt |
29389349 |
T |
|
| Q |
164 |
cttggaagatcc |
175 |
Q |
| |
|
||||||||||| |
|
|
| T |
29389350 |
tttggaagatcc |
29389361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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