View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4833_high_4 (Length: 364)
Name: NF4833_high_4
Description: NF4833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4833_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 2 - 354
Target Start/End: Original strand, 15506166 - 15506519
Alignment:
| Q |
2 |
tatttgacattctaagatatataaatttcctatttactctactatgcttatttattctcgtggttacattggcataagattaaaggatgatatgtggaaa |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15506166 |
tatttgacattctaagatatataaatttcctatttactctactatgcttatttattctcgtggttacattggcataagattaaaggatgatatgtggaaa |
15506265 |
T |
|
| Q |
102 |
agctttaattagattttaagccattaaggcatattgtgctcaagagtgtccgacatgata-gtgcatgtgaattcggttggaagtttgttatggaaagac |
200 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |
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| T |
15506266 |
agctttaattagcttttaagccattaaggcatattgtgctcaagagtgtccgacatgacaagtgcatgtgaattcggttggaagtttgttatggaaagac |
15506365 |
T |
|
| Q |
201 |
atgccacaagaacttccgtagttggatttggtgaatccaatttctgtaccataagaaaaataaccattacccttgatgaaaaagttgaaataaaactatg |
300 |
Q |
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| T |
15506366 |
atgccacaagaacttccgtagttggatttggtgaatccattttctgtaccataagaaaaataaccattacccttgatgaaaaagttgaaataaaactatg |
15506465 |
T |
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| Q |
301 |
caacagtagtgttcttgaatcatgtcagaatttattctattatctttagaacac |
354 |
Q |
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| T |
15506466 |
caacagcagtgttcttgaatcatgtcagaatttattctattatctttagaacac |
15506519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 18139080 - 18139028
Alignment:
| Q |
20 |
atataaatttcctatttactctactatgcttatttattctcgtggttacattg |
72 |
Q |
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| T |
18139080 |
atataaattgcctatttactctactttgtttatgtattcccgtggttatattg |
18139028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 52
Target Start/End: Original strand, 37875873 - 37875905
Alignment:
| Q |
20 |
atataaatttcctatttactctactatgcttat |
52 |
Q |
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|||||||||||||||||||||||||||| |||| |
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| T |
37875873 |
atataaatttcctatttactctactatgtttat |
37875905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 52
Target Start/End: Complemental strand, 23895808 - 23895776
Alignment:
| Q |
20 |
atataaatttcctatttactctactatgcttat |
52 |
Q |
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|||||||||||||||||||||||||||| |||| |
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| T |
23895808 |
atataaatttcctatttactctactatgtttat |
23895776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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