View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4834-Insertion-1 (Length: 1064)
Name: NF4834-Insertion-1
Description: NF4834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4834-Insertion-1 |
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Alignment Details
Target: chr1 (Bit Score: 781; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 781; E-Value: 0
Query Start/End: Original strand, 7 - 991
Target Start/End: Complemental strand, 30342993 - 30342021
Alignment:
| Q |
7 |
acttccgtcgcagattgctgattttattgacatggaggagcttactctatcaaaaaacaatctctccggtgcggttccggtgagtttgggaaaactgaag |
106 |
Q |
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| T |
30342993 |
acttccgtcgcagattggtgattttattgacatggaagagcttactctatcaaaaaacaatctctccggtgcggttccggtgagtttgggaaaactgaag |
30342894 |
T |
|
| Q |
107 |
aagctgaagattcttgatcttagtcagaatgagtttaaagggtgtgttccagaacacgttgggaatctaacttcacttttgaagcttgatttaagctata |
206 |
Q |
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| T |
30342893 |
aagctgaagattcttgatcttagtcagaatgagtttaaagggtgtgttccagaacacgttgggaatctaacttctcttttgaagcttgatttaagctata |
30342794 |
T |
|
| Q |
207 |
atgagtttagttgtaaaatcccagagagttttagcaacttgnnnnnnntggaatttttggatttaagtttcaatctttttggtaattttggtgtcccatt |
306 |
Q |
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| T |
30342793 |
atgggtttagttgtaaaatcccagagagttttagcaacttgaaaaaaatggaatttttggatttaagtttcaatctttatggtaattttggtgtcccttt |
30342694 |
T |
|
| Q |
307 |
gttcttaggagaaatccccggattgaaagaagtttatttaagtgggaatttactttctggtaaaattccagaaatatggaaaaatcttggtgctgttgaa |
406 |
Q |
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| T |
30342693 |
gttcttaggagaaatccccggattgaaagaagtttatttaagtgggaatttactttctggtaaaattccagaaatatggaaaaatcttggtgctgttgaa |
30342594 |
T |
|
| Q |
407 |
aaaattggattttctaaaatggggttggttggtaaaattccagtttcaatgggggtttatttgaagaatttatcttatcttggacttgataacaataagc |
506 |
Q |
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| T |
30342593 |
aaaattggattttctaaaatggggttggttggtaaaattccagtttcaatgggggtttatttgaagaatttatcttatcttggacttgataacaataagc |
30342494 |
T |
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| Q |
507 |
ttgatgggtctgttcctaaggaatttgggcttttggaatttgctaatgagatcaatttggagaacaacaatttgagtggtagaatcactttctcaactag |
606 |
Q |
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| T |
30342493 |
ttgatgggtctgttcctaaggaatttgggcttttggaatttgctaatgagatcaatttggagaacaacaatttgagtggtagaatcactttctcaactag |
30342394 |
T |
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| Q |
607 |
agttggacagaagttaaagttggcaggaaatgtagggctgtgtttgggaaacaataatagtagctgttctgaaaatggaggtagtttgggtcaacttaat |
706 |
Q |
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| T |
30342393 |
agttggacagaagttaaagttggcaggaaatgtagggctgtgtttgggaaacaataatagtagctgttctgaaaatggaggtagtttgggtcaacttaat |
30342294 |
T |
|
| Q |
707 |
ccctgcaaaataacagatgttgtttctgatagtgaggtcctttttcaatgggggcttctttgatgctttttgatcctattaagctgggttttgggttatg |
806 |
Q |
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| T |
30342293 |
ccctgcaaaataacagatgttgtttctgatagtgaagtcc-ttttcaat-ggggcttctttgatgctttttgatcctattaagctgg--ttttggttatg |
30342198 |
T |
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| Q |
807 |
ttgtttgttcctcatggggattttgagttggggaaagggtgaagatatgttttgtcnnnnnnnnaccagaaaaagaaaatactcctatctgtttactcct |
906 |
Q |
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| T |
30342197 |
ttgtttgtt-ttcat-gggattttgaattggg--aagggtgaagatatgttttgtcttttttttaccagaaaa--gaaatactcctatctgtttact-ct |
30342105 |
T |
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| Q |
907 |
tactagggaaagggttttttgaattcaccaaatgtaatgggaatggatagtgatggtagtgtagtag-gaagaaatgttatttaga |
991 |
Q |
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| T |
30342104 |
tactaggaaaaggg--ttttgaattcaacaaatgtaaatggaaatgatagtgatggtagtgtagtagtgaagaaatgttatttaga |
30342021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 550 - 637
Target Start/End: Original strand, 30333362 - 30333449
Alignment:
| Q |
550 |
taatgagatcaatttggagaacaacaatttgagtggtagaatcactttctcaactagagttggacagaagttaaagttggcaggaaat |
637 |
Q |
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| T |
30333362 |
taatgagatcaatttggagaacaacaatttgagtggtataatcactttctcagccagagttggacagaagttgaagttggcaggaaat |
30333449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 44 - 132
Target Start/End: Original strand, 30333218 - 30333306
Alignment:
| Q |
44 |
gagcttactctatcaaaaaacaatctctccggtgcggttccggtgagtttgggaaaactgaagaagctgaagattcttgatcttagtca |
132 |
Q |
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| T |
30333218 |
gagcttactcttgctagaaacaatctctccggcaagattccagtgagtttgggagcgctgaagaagctgaaggttcttgatctgagtca |
30333306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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