View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4834-Insertion-3 (Length: 825)

Name: NF4834-Insertion-3
Description: NF4834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4834-Insertion-3
NF4834-Insertion-3
[»] chr3 (19 HSPs)
chr3 (8-456)||(10357420-10357869)
chr3 (460-825)||(10356662-10357026)
chr3 (8-450)||(10132352-10132795)
chr3 (460-825)||(10133166-10133529)
chr3 (460-820)||(10135636-10135995)
chr3 (460-825)||(10073585-10073949)
chr3 (246-420)||(10073089-10073263)
chr3 (70-198)||(10072930-10073061)
chr3 (194-317)||(10135164-10135293)
chr3 (70-195)||(10135007-10135132)
chr3 (389-457)||(10101492-10101560)
chr3 (389-457)||(10212417-10212485)
chr3 (8-66)||(10101275-10101333)
chr3 (8-66)||(10212200-10212258)
chr3 (352-434)||(37273143-37273225)
chr3 (359-434)||(30923884-30923959)
chr3 (335-434)||(36646344-36646443)
chr3 (384-434)||(44284091-44284141)
chr3 (364-433)||(2152169-2152238)
[»] chr6 (6 HSPs)
chr6 (351-438)||(2455815-2455902)
chr6 (335-416)||(2460113-2460194)
chr6 (387-439)||(25100047-25100099)
chr6 (351-439)||(4420647-4420735)
chr6 (366-416)||(33080571-33080621)
chr6 (369-434)||(6647396-6647461)
[»] chr8 (3 HSPs)
chr8 (365-439)||(27645908-27645982)
chr8 (364-439)||(26473743-26473818)
chr8 (315-380)||(13000366-13000431)
[»] chr2 (6 HSPs)
chr2 (352-434)||(6546996-6547078)
chr2 (364-434)||(34652027-34652097)
chr2 (367-434)||(36852481-36852548)
chr2 (364-434)||(32821818-32821888)
chr2 (364-434)||(1939323-1939393)
chr2 (352-437)||(14316124-14316209)
[»] chr5 (4 HSPs)
chr5 (364-457)||(10272422-10272515)
chr5 (364-434)||(37611206-37611276)
chr5 (364-434)||(37787936-37788006)
chr5 (372-417)||(19369339-19369384)
[»] chr4 (5 HSPs)
chr4 (366-439)||(11264305-11264378)
chr4 (335-416)||(27123314-27123395)
chr4 (364-439)||(2996577-2996652)
chr4 (371-457)||(30207569-30207655)
chr4 (384-457)||(36048519-36048592)
[»] chr1 (3 HSPs)
chr1 (351-416)||(6262047-6262112)
chr1 (364-457)||(15515527-15515620)
chr1 (351-418)||(15581279-15581346)
[»] chr7 (4 HSPs)
chr7 (346-434)||(33645934-33646021)
chr7 (364-418)||(12234880-12234934)
chr7 (359-436)||(941547-941624)
chr7 (335-404)||(13438621-13438690)


Alignment Details
Target: chr3 (Bit Score: 366; Significance: 0; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 8 - 456
Target Start/End: Complemental strand, 10357869 - 10357420
Alignment:
Q  8 ggttgctatgtgaaaatctatacgctgagtgagtttactgaaatataccacagttagctagattttttatgatatgaactagattttttcatcttcatta 107  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  10357869 ggttgctatgtgaaaatctatacgcagagtgagtttactgaaatatacaacagttagctagagtttttatgatatgaactagattttttcatcttcatta 10357770  T
Q  108 tttaaaacaaaaagttatctactccgtttcctgattaaaagctttttgattgtgtgatgaggtcgttttcgactttcgtttctttgcactcgtctgcttt 207  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10357769 tttaaaacaaaaagttatctactccgttttctgattaaaagctttttgattgtgtgatgaggtcgttttcgactttcgtttctttgcactcgtctgcttt 10357670  T
Q  208 ctaaatgtatgcctagtttctcaacaccttataaaagatcagaaaggttctatactgttgtttttatgtttgcatagaaagatcaagggcttgtttggat 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||||||||    
T  10357669 ctaaatgtatgcctagtttctcaacaccttataaaagatcagaaaggtgctatactgttgtttttatgtttccatataaagatcaagggcttgtttggat 10357570  T
Q  308 taggtcattacctactggcttatgcattt-gtcagactattggaaagagctgatgggaacaacttatgacatgtatttaagctattttcaagttatttct 406  Q
     ||||||||| |||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||     
T  10357569 gaggtcattatctactggcatatgcatttagtcggactattggaaagagctgatgggaacaacttatgacatgtatataagctattttcgagttatttca 10357470  T
Q  407 ataagctctctaagatggcttatgaaaataactcttatcttatacgaaaa 456  Q
     ||||||||||||||||||||||||||| ||||  ||||||||| |||||    
T  10357469 gtaagctctctaagatggcttatgaaaacaacttgtatcttatatgaaaa 10357420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 460 - 825
Target Start/End: Complemental strand, 10357026 - 10356662
Alignment:
Q  460 cctaacctcattgcctcttgaagcgcccatctcactcctagtgcttcggccaagcaagggtctacctccaccgattccaatttgcacttgctatgagtaa 559  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10357026 cctaacctcattgcctcttgaagcgcccatctcactcctagtgcttcggccaagcaagggtctacctccaccgattccaatttgcacttgctatgagtaa 10356927  T
Q  560 ctattcctgtctgggtcttgtttttcagaatcagcccccatcctgtttgtccgcttgaaaaacatctaacattcacaaacatatgatgggatacatcctg 659  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||    
T  10356926 ctattcctgtctgtgtcttgtttttcagaatcagcccccatcctgtttgtccgcttgaaaaacatccagcatccacaaacatatgatgggatacatcctg 10356827  T
Q  660 gaacgtgccagcattgtccctcctttagcggtgtggttgaggcctttgcttgacattagcagaattgaacgtctgaataaactgaacagctctgtgagct 759  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  10356826 gaacgtgccagcattgtccctcctttagcggggtggttgaggcctttgcttgacattagcaggattgaacgtctgaataaactgaacagctctgtgagct 10356727  T
Q  760 aaattaacgggggtctgtagtggccccattaaaaacagtttgatttctagcataccaaagcatcca 825  Q
    |||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  10356726 aaattaac-ggggtctgtagtggccccactaaaaacagcttgatttctagcataccaaagcatcca 10356662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 8 - 450
Target Start/End: Original strand, 10132352 - 10132795
Alignment:
Q  8 ggttgctatgtgaaaatctatacgctgagtgagtttactgaaatataccacagttagctagattttttatgatatgaactagattttttcatcttcatta 107  Q
    ||||||||||||||| ||||||| | |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  10132352 ggttgctatgtgaaactctatacacagagtgagtttactgaaatatacaacagttagctagattttttataatatgaactagattttttcatcttcatta 10132451  T
Q  108 tttaaaacaaaaagttatctactccgtttcctgattaaaagctttttgattgtgtgatgaggtcgttttcgactttcgtttctttgcactcgtctgcttt 207  Q
    |||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10132452 tttaaaacaaaaagttttctacttcgttttctgattaaaagctttttgattgtgtgatgaggtcgttttcgactttcgtttctttgcactcgtctgcttt 10132551  T
Q  208 ctaaatgtatgcctagtttctcaacaccttataaaagatcagaaaggttctatactgttgtttttatgtttgcatagaaagatcaagggcttgtttggat 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |||| ||||||||| |||||||||||||    
T  10132552 ctaaatgtatgcctagtttctcaacaccttataaaagatcagaaagttgctatactgttgtttttatgtttccatataaagatcaaaggcttgtttggat 10132651  T
Q  308 taggtcattacctactggcttatgcattt-gtcagactattggaaagagctgatgggaacaacttatgacatgtatttaagctattttcaagttatttct 406  Q
     ||||||||| | |||||| ||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||  |||||||||     
T  10132652 gaggtcattatccactggcatatgcatttggtcggactattggaaacagctgatgggaacaacttatgacatgtatataagctatttttgagttatttcc 10132751  T
Q  407 ataagctctctaagatggcttatgaaaataactcttatcttata 450  Q
     |||||||| |||||||||||||||||| ||||  |||||||||    
T  10132752 gtaagctctgtaagatggcttatgaaaacaacttgtatcttata 10132795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 460 - 825
Target Start/End: Original strand, 10133166 - 10133529
Alignment:
Q  460 cctaacctcattgcctcttgaagcgcccatctcactcctagtgcttcggccaagcaagggtctacctccaccgattccaatttgcacttgctatgagtaa 559  Q
    |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10133166 cctaacctcattgcctcttgaagcgcccatcttactcctggtgcttcggccaagcaagggtctacctccaccgattccaatttgcacttgctatgagtaa 10133265  T
Q  560 ctattcctgtctgggtcttgtttttcagaatcagcccccatcctgtttgtccgcttgaaaaacatctaacattcacaaacatatgatgggatacatcctg 659  Q
    |||||| |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  10133266 ctattcttgtctgtgtcttgtttttcagaatcagcccccatcctgttcgtccgcttgaaaaacatctaacatccacaaacatatgatgggatacatcctg 10133365  T
Q  660 gaacgtgccagcattgtccctcctttagcggtgtggttgaggcctttgcttgacattagcagaattgaacgtctgaataaactgaacagctctgtgagct 759  Q
    |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| | || ||||  |||||| |||||||||||| | ||||||    
T  10133366 gaacgtgccagcattgtccctcctttggcggggtggttgaggcctttgcttgacattagctgcatggaactcctgaat-aactgaacagctgtttgagct 10133464  T
Q  760 aaattaacgggggtctgtagtggccccattaaaaacagtttgatttctagcataccaaagcatcca 825  Q
    |||||||| || |||||||||||||||||||||||||| |||||||||||| ||||||||| ||||    
T  10133465 aaattaac-ggagtctgtagtggccccattaaaaacagcttgatttctagcgtaccaaagcttcca 10133529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 460 - 820
Target Start/End: Original strand, 10135636 - 10135995
Alignment:
Q  460 cctaacctcattgcctcttgaagcgcccatctcactcctagtgcttcggccaagcaagggtctacctccaccgattccaatttgcacttgctatgagtaa 559  Q
    |||||||||| ||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||    
T  10135636 cctaacctcactgcctctcgaagcgcccatctaactcctagtgcttcggcctagcaagggtctacctccatcgattccaatttgcacttgctatgagtaa 10135735  T
Q  560 ctattcctgtctgggtcttgtttttcagaatcagcccccatcctgtttgtccgcttgaaaaacatctaacattcacaaacatatgatgggatacatcctg 659  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  10135736 ctattcctgtctgtgtcttgtttttcagaatcagcccccatcctgtttgtgcgcttgaaaaacatctaacatccacaaacatatgatgggatacatcctg 10135835  T
Q  660 gaacgtgccagcattgtccctcctttagcggtgtggttgaggcctttgcttgacattagcagaattgaacgtctgaataaactgaacagctctgtgagct 759  Q
    ||||||||||||||||||| |||||| |||| ||||||||||||||||||||| |||||| | |||||||  ||||||||||||||||| | |||||||     
T  10135836 gaacgtgccagcattgtccatcctttggcggggtggttgaggcctttgcttgaaattagctgcattgaactcctgaataaactgaacagttgtgtgagca 10135935  T
Q  760 aaattaacgggggtctgtagtggccccattaaaaacagtttgatttctagcataccaaagc 820  Q
    |||||||| ||||||||||  ||||||||||||||||| |||||||||||| |||||||||    
T  10135936 aaattaac-ggggtctgtatcggccccattaaaaacagcttgatttctagcgtaccaaagc 10135995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 460 - 825
Target Start/End: Original strand, 10073585 - 10073949
Alignment:
Q  460 cctaacctcattgcctcttgaagcgcccatctcactcctagtgcttcggccaagcaagggtctacctccaccgattccaatttgcacttgctatgagtaa 559  Q
    |||||||||| |||| |||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||||  ||||||||    
T  10073585 cctaacctcactgccacttgaagcgcccatgtcactcgtagtgcttcggccaagcaagggtctacttccaccgaatccaatttgcacttgtgatgagtaa 10073684  T
Q  560 ctattcctgtctgggtcttgtttttcagaatcagcccccatcctgtttgtccgcttgaaaaacatctaacattcacaaacatatgatgggatacatcctg 659  Q
     |||||||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||||| | ||| |||||||||||||||||||| ||||||    
T  10073685 ttattcctgtctgtgtctggtttttcagaatcagcccccatcctgtttgtccgtttgaaaaacatccagcatccacaaacatatgatgggatatatcctg 10073784  T
Q  660 gaacgtgccagcattgtccctcctttagcggtgtggttgaggcctttgcttgacattagcagaattgaacgtctgaataaactgaacagctctgtgagct 759  Q
    | |||||||| ||||||||||||||| |||| ||||||||||||||||||||||||| || | |||||||  |||||||||||||| |||| ||||||||    
T  10073785 gcacgtgccatcattgtccctcctttggcggggtggttgaggcctttgcttgacatttgctgcattgaactcctgaataaactgaatagctgtgtgagct 10073884  T
Q  760 aaattaacgggggtctgtagtggccccattaaaaacagtttgatttctagcataccaaagcatcca 825  Q
    ||||||||  |||||||||||||||||||||||||||| |||||||||||| ||||||||| ||||    
T  10073885 aaattaac-agggtctgtagtggccccattaaaaacagcttgatttctagcgtaccaaagcttcca 10073949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 123; E-Value: 9e-63
Query Start/End: Original strand, 246 - 420
Target Start/End: Original strand, 10073089 - 10073263
Alignment:
Q  246 tcagaaaggttctatactgttgtttttatgtttgcatagaaagatcaagggcttgtttggattaggtcattacctactggcttatgcatttgtcagacta 345  Q
    |||||||||| ||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||| | ||||||||| || |||||    
T  10073089 tcagaaaggtgctataatgttgtttttatgtttccatagaaagatcaaggacttgtttggattaggtcattatctactgacatatgcatttttcggacta 10073188  T
Q  346 ttggaaagagctgatgggaacaacttatgacatgtatttaagctattttcaagttatttctataagctctctaag 420  Q
    |||||||||| | |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  10073189 ttggaaagagattatgggaacaacttatgacatgtatataagctatttttaagttatttctataagctctctaag 10073263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 70 - 198
Target Start/End: Original strand, 10072930 - 10073061
Alignment:
Q  70 ttttttatgatatgaactagattttttcatcttcattatt---taaaacaaaaagttatctactccgtttcctgattaaaagctttttgattgtgtgatg 166  Q
    ||||||||||||||||||||||| ||||||||||||||||   ||||| |  || | || |||||||||| ||||||||||||||||||||||||||||     
T  10072930 ttttttatgatatgaactagattctttcatcttcattattctataaaaaagcaaatgatatactccgttttctgattaaaagctttttgattgtgtgatc 10073029  T
Q  167 aggtcgttttcgactttcgtttctttgcactc 198  Q
    ||||||||||||||||||||||||||||||||    
T  10073030 aggtcgttttcgactttcgtttctttgcactc 10073061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 194 - 317
Target Start/End: Original strand, 10135164 - 10135293
Alignment:
Q  194 cactcgtctgctttctaaatgtatg----cctagtttctcaacacctt--ataaaagatcagaaaggttctatactgttgtttttatgtttgcatagaaa 287  Q
    ||||| |||||||||||||||||||    | |||||||||||||||||  || ||||||||||||||| |||||||||||||||||||||| ||||||||    
T  10135164 cactcctctgctttctaaatgtatgtatgcatagtttctcaacacctttaattaaagatcagaaaggtgctatactgttgtttttatgtttccatagaaa 10135263  T
Q  288 gatcaagggcttgtttggattaggtcatta 317  Q
    |||||||||||||| |||||||||||||||    
T  10135264 gatcaagggcttgtctggattaggtcatta 10135293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 70 - 195
Target Start/End: Original strand, 10135007 - 10135132
Alignment:
Q  70 ttttttatgatatgaactagattttttcatcttcattattt--aaaacaaaaagttatctactccgtttcctgattaaaagctttttgattgtgtgatga 167  Q
    |||||||| |||| ||||||||||||||||||||||||||   |||| ||||| | || |||||| ||| |||||||||| ||||||||||| ||||| |    
T  10135007 ttttttattatat-aactagattttttcatcttcattattctaaaaaaaaaaaatgatatactccattttctgattaaaa-ctttttgattgcgtgatca 10135104  T
Q  168 ggtcgttttcgactttcgtttctttgca 195  Q
    | ||||||||||||||||||||||||||    
T  10135105 gatcgttttcgactttcgtttctttgca 10135132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 389 - 457
Target Start/End: Original strand, 10101492 - 10101560
Alignment:
Q  389 tattttcaagttatttctataagctctctaagatggcttatgaaaataactcttatcttatacgaaaac 457  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||| ||||||    
T  10101492 tattttcaagttatttctataagctctctaagagggcttatgaaaacaacttttatcttatatgaaaac 10101560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 389 - 457
Target Start/End: Original strand, 10212417 - 10212485
Alignment:
Q  389 tattttcaagttatttctataagctctctaagatggcttatgaaaataactcttatcttatacgaaaac 457  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||| ||||||    
T  10212417 tattttcaagttatttctataagctctctaagagggcttatgaaaacaacttttatcttatatgaaaac 10212485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 10101275 - 10101333
Alignment:
Q  8 ggttgctatgtgaaaatctatacgctgagtgagtttactgaaatataccacagttagct 66  Q
    |||||||||||||||||||||| || |||||||||||||||||||||| ||||||||||    
T  10101275 ggttgctatgtgaaaatctataagcagagtgagtttactgaaatatacaacagttagct 10101333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 10212200 - 10212258
Alignment:
Q  8 ggttgctatgtgaaaatctatacgctgagtgagtttactgaaatataccacagttagct 66  Q
    |||||||||||||||||||||| || |||||||||||||||||||||| ||||||||||    
T  10212200 ggttgctatgtgaaaatctataagcagagtgagtttactgaaatatacaacagttagct 10212258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 352 - 434
Target Start/End: Complemental strand, 37273225 - 37273143
Alignment:
Q  352 agagctgatgggaacaacttatgacatgtatttaagctattttcaagttatttctataagctctctaagatggcttatgaaaa 434  Q
    |||||| |||| |||||||||||||||||   |||| | ||||||| ||||||| ||||| |||| ||||| |||||||||||    
T  37273225 agagcttatggaaacaacttatgacatgtccataagttgttttcaacttatttccataagttctccaagatagcttatgaaaa 37273143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 359 - 434
Target Start/End: Original strand, 30923884 - 30923959
Alignment:
Q  359 atgggaacaacttatgacatgtatttaagctattttcaagttatttctataagctctctaagatggcttatgaaaa 434  Q
    |||| |||| |||||||||||| | |||||| ||||||  |||||||||||| ||||||| ||| | |||||||||    
T  30923884 atggaaacagcttatgacatgtctataagctgttttcagcttatttctataaactctctaggataggttatgaaaa 30923959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 335 - 434
Target Start/End: Original strand, 36646344 - 36646443
Alignment:
Q  335 ttgtcagactattggaaagagctgatgggaacaacttatgacatgtatttaagctattttcaagttatttctataagctctctaagatggcttatgaaaa 434  Q
    |||| |||||||| |  |||||| |||| ||| ||||||| |||||   |||||| ||||||  |||||||||||| ||||||| ||| |||||||||||    
T  36646344 ttgtaagactatttgggagagcttatggaaaccacttatggcatgtccataagctgttttcatcttatttctataaactctctaggatagcttatgaaaa 36646443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 384 - 434
Target Start/End: Original strand, 44284091 - 44284141
Alignment:
Q  384 taagctattttcaagttatttctataagctctctaagatggcttatgaaaa 434  Q
    |||||||||||||  |||||||||||||||||| | ||| |||||||||||    
T  44284091 taagctattttcagcttatttctataagctctccaggatagcttatgaaaa 44284141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 364 - 433
Target Start/End: Original strand, 2152169 - 2152238
Alignment:
Q  364 aacaacttatgacatgtatttaagctattttcaagttatttctataagctctctaagatggcttatgaaa 433  Q
    |||||||||||||||||   |||||| ||||||| || ||||||||||||||| | ||| | ||||||||    
T  2152169 aacaacttatgacatgttcgtaagctgttttcaacttgtttctataagctctcaaggatagtttatgaaa 2152238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 351 - 438
Target Start/End: Complemental strand, 2455902 - 2455815
Alignment:
Q  351 aagagctgatgggaacaacttatgacatgtatttaagctattttcaagttatttctataagctctctaagatggcttatgaaaataac 438  Q
    ||||||| |||| ||||||||||||||||    ||| |||||||||| ||||||| |||||||||| ||||| |||||||||||||||    
T  2455902 aagagcttatggaaacaacttatgacatgcccataaactattttcaacttatttccataagctctccaagatagcttatgaaaataac 2455815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 335 - 416
Target Start/End: Original strand, 2460113 - 2460194
Alignment:
Q  335 ttgtcagactattggaaagagctgatgggaacaacttatgacatgtatttaagctattttcaagttatttctataagctctc 416  Q
    |||| ||||| || || |||||| |||| ||||||||||||||||| |||||| | ||||||| ||||||| ||||||||||    
T  2460113 ttgtgagactgtttgagagagcttatggaaacaacttatgacatgtctttaagttgttttcaacttatttccataagctctc 2460194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 387 - 439
Target Start/End: Complemental strand, 25100099 - 25100047
Alignment:
Q  387 gctattttcaagttatttctataagctctctaagatggcttatgaaaataact 439  Q
    ||||||||||| ||||||||||||||||| |||||| ||||||||||| ||||    
T  25100099 gctattttcaacttatttctataagctctttaagatagcttatgaaaacaact 25100047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 351 - 439
Target Start/End: Complemental strand, 4420735 - 4420647
Alignment:
Q  351 aagagctgatgggaacaacttatgacatgtatttaagctattttcaagttatttctataagctctctaagatggcttatgaaaataact 439  Q
    ||||||| || | ||||| |||||||||||   |||||| ||||||  ||||||| |||||||||| ||||| ||||| ||||||||||    
T  4420735 aagagcttatagaaacaaattatgacatgttcataagctgttttcagcttatttccataagctctccaagatagcttaggaaaataact 4420647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 366 - 416
Target Start/End: Original strand, 33080571 - 33080621
Alignment:
Q  366 caacttatgacatgtatttaagctattttcaagttatttctataagctctc 416  Q
    ||||||||||||||| | |||| ||||||||  ||||||||||||||||||    
T  33080571 caacttatgacatgtttataagttattttcagtttatttctataagctctc 33080621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 369 - 434
Target Start/End: Complemental strand, 6647461 - 6647396
Alignment:
Q  369 cttatgacatgtatttaagctattttcaagttatttctataagctctctaagatggcttatgaaaa 434  Q
    ||||||||||||   |||| | ||||||| ||||||  |||||||||||||||| |||||||||||    
T  6647461 cttatgacatgttcataagatgttttcaacttattttcataagctctctaagatagcttatgaaaa 6647396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 365 - 439
Target Start/End: Complemental strand, 27645982 - 27645908
Alignment:
Q  365 acaacttatgacatgtatttaagctattttcaagttatttctataagctctctaagatggcttatgaaaataact 439  Q
    |||||||||||||| | | |||||||||||||| ||||||||||||||||||||  ||  || ||||||||||||    
T  27645982 acaacttatgacatatctataagctattttcaacttatttctataagctctctagtatatctaatgaaaataact 27645908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 364 - 439
Target Start/End: Original strand, 26473743 - 26473818
Alignment:
Q  364 aacaacttatgacatgtatttaagctattttcaagttatttctataagctctctaagatggcttatgaaaataact 439  Q
    |||| |||||||||||| | ||||||| ||| || ||||||  |||||||||||| ||| ||||||||||| ||||    
T  26473743 aacagcttatgacatgtctataagctagttttaacttattttcataagctctctaggatagcttatgaaaacaact 26473818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 315 - 380
Target Start/End: Original strand, 13000366 - 13000431
Alignment:
Q  315 ttacctactggcttatgcatttgtcagactattggaaagagctgatgggaacaacttatgacatgt 380  Q
    |||||||||||| || ||| |||| |||||||| | ||||| | |||| |||||||||||||||||    
T  13000366 ttacctactggcataagcacttgtgagactatttgcaagagtttatggtaacaacttatgacatgt 13000431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 352 - 434
Target Start/End: Complemental strand, 6547078 - 6546996
Alignment:
Q  352 agagctgatgggaacaacttatgacatgtatttaagctattttcaagttatttctataagctctctaagatggcttatgaaaa 434  Q
    |||||| |||| ||||||||||   ||||  ||||||||||||||| ||||||||||||| |||||||||| |||| ||||||    
T  6547078 agagcttatggaaacaacttatattatgtccttaagctattttcaacttatttctataaggtctctaagatagcttgtgaaaa 6546996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 364 - 434
Target Start/End: Original strand, 34652027 - 34652097
Alignment:
Q  364 aacaacttatgacatgtatttaagctattttcaagttatttctataagctctctaagatggcttatgaaaa 434  Q
    |||||||||||||||||   |||||| ||||||| ||||||| |||||||||| ||||| |||||||||||    
T  34652027 aacaacttatgacatgtccataagctgttttcaacttatttccataagctctccaagatagcttatgaaaa 34652097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 367 - 434
Target Start/End: Complemental strand, 36852548 - 36852481
Alignment:
Q  367 aacttatgacatgtatttaagctattttcaagttatttctataagctctctaagatggcttatgaaaa 434  Q
    |||||||||||||| | ||| |||||||||  ||||||| |||||||||| ||||| |||||||||||    
T  36852548 aacttatgacatgtctataaactattttcagattatttccataagctctccaagatagcttatgaaaa 36852481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 364 - 434
Target Start/End: Complemental strand, 32821888 - 32821818
Alignment:
Q  364 aacaacttatgacatgtatttaagctattttcaagttatttctataagctctctaagatggcttatgaaaa 434  Q
    |||||||||||||||||   |||||| ||||||  ||||||||||||||||| || ||| |||||||||||    
T  32821888 aacaacttatgacatgtccataagctgttttcagtttatttctataagctctttaggatagcttatgaaaa 32821818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 364 - 434
Target Start/End: Original strand, 1939323 - 1939393
Alignment:
Q  364 aacaacttatgacatgtatttaagctattttcaagttatttctataagctctctaagatggcttatgaaaa 434  Q
    |||||||||||||||||   |||||| ||||||| ||||||| |||||||||| |  || |||||||||||    
T  1939323 aacaacttatgacatgtccataagctgttttcaacttatttccataagctctccagtatagcttatgaaaa 1939393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 352 - 437
Target Start/End: Original strand, 14316124 - 14316209
Alignment:
Q  352 agagctgatgggaacaacttatgacatgtatttaagctattttcaagttatttctataagctctctaagatggcttatgaaaataa 437  Q
    |||||| |||| ||||||||||||||| | | |||||| ||||||  |||||||||||   |||| ||||| || |||||||||||    
T  14316124 agagcttatggaaacaacttatgacatatgtataagctgttttcagcttatttctatagcttctcaaagattgcatatgaaaataa 14316209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 364 - 457
Target Start/End: Original strand, 10272422 - 10272515
Alignment:
Q  364 aacaacttatgacatgtatttaagctattttcaagttatttctataagctctctaagatggcttatgaaaataactcttatcttatacgaaaac 457  Q
    ||||||||||||||||| | |||| | ||||||  ||||||  |||| ||||| ||||||||||||||||| ||||  || |||||||||||||    
T  10272422 aacaacttatgacatgtctgtaagttgttttcagcttattttcataaactctccaagatggcttatgaaaacaacttatagcttatacgaaaac 10272515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 364 - 434
Target Start/End: Original strand, 37611206 - 37611276
Alignment:
Q  364 aacaacttatgacatgtatttaagctattttcaagttatttctataagctctctaagatggcttatgaaaa 434  Q
    |||||||| ||||||||   |||||| |||||| |||||||| |||||||||| ||||| |||||||||||    
T  37611206 aacaacttgtgacatgttcataagctgttttcaggttatttccataagctctccaagatagcttatgaaaa 37611276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 364 - 434
Target Start/End: Original strand, 37787936 - 37788006
Alignment:
Q  364 aacaacttatgacatgtatttaagctattttcaagttatttctataagctctctaagatggcttatgaaaa 434  Q
    |||||||| ||||||||   |||||| |||||| |||||||| |||||||||| ||||| |||||||||||    
T  37787936 aacaacttgtgacatgttcataagctgttttcaggttatttccataagctctccaagatagcttatgaaaa 37788006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 372 - 417
Target Start/End: Complemental strand, 19369384 - 19369339
Alignment:
Q  372 atgacatgtatttaagctattttcaagttatttctataagctctct 417  Q
    ||||||||| | |||||| ||||||| |||||||||||||||||||    
T  19369384 atgacatgtctgtaagctgttttcaatttatttctataagctctct 19369339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000005; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 366 - 439
Target Start/End: Complemental strand, 11264378 - 11264305
Alignment:
Q  366 caacttatgacatgtatttaagctattttcaagttatttctataagctctctaagatggcttatgaaaataact 439  Q
    |||||||||||||||   ||| || ||||||| ||||||| |||||||||||| ||||||||||||||| ||||    
T  11264378 caacttatgacatgtccataaactgttttcaacttatttccataagctctctaggatggcttatgaaaacaact 11264305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 335 - 416
Target Start/End: Original strand, 27123314 - 27123395
Alignment:
Q  335 ttgtcagactattggaaagagctgatgggaacaacttatgacatgtatttaagctattttcaagttatttctataagctctc 416  Q
    |||| ||||| || || |||||| |||| ||||||||||||||||| |||||| | ||||||| ||||||| ||||||||||    
T  27123314 ttgtgagactgtttgagagagcttatggaaacaacttatgacatgtctttaagttgttttcaacttatttccataagctctc 27123395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 364 - 439
Target Start/End: Complemental strand, 2996652 - 2996577
Alignment:
Q  364 aacaacttatgacatgtatttaagctattttcaagttatttctataagctctctaagatggcttatgaaaataact 439  Q
    |||||||||||||||||   |||||| ||||||| ||||||  ||| |||||| ||||| ||||||||||| ||||    
T  2996652 aacaacttatgacatgtccataagcttttttcaacttattttcatacgctctccaagatagcttatgaaaacaact 2996577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 371 - 457
Target Start/End: Original strand, 30207569 - 30207655
Alignment:
Q  371 tatgacatgtatttaagctattttcaagttatttctataagctctctaagatggcttatgaaaataactcttatcttatacgaaaac 457  Q
    |||||||||| | |||||| ||||||  ||||||| |||| ||||||||| | ||||||||||| ||||  || |||||| ||||||    
T  30207569 tatgacatgtctgtaagctgttttcagcttatttccataatctctctaaggtagcttatgaaaacaacttatagcttatatgaaaac 30207655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 384 - 457
Target Start/End: Complemental strand, 36048592 - 36048519
Alignment:
Q  384 taagctattttcaagttatttctataagctctctaagatggcttatgaaaataactcttatcttatacgaaaac 457  Q
    ||||||||| |||  ||||||| |||||||||||||||| |||| |||||||| ||  || |||||| ||||||    
T  36048592 taagctattgtcagcttatttccataagctctctaagatagcttttgaaaatagcttatagcttatatgaaaac 36048519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 351 - 416
Target Start/End: Complemental strand, 6262112 - 6262047
Alignment:
Q  351 aagagctgatgggaacaacttatgacatgtatttaagctattttcaagttatttctataagctctc 416  Q
    ||||||| ||| ||||||||||||||||||   |||||||||||||| ||||||| | ||||||||    
T  6262112 aagagcttatgagaacaacttatgacatgttcataagctattttcaacttatttccacaagctctc 6262047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 364 - 457
Target Start/End: Complemental strand, 15515620 - 15515527
Alignment:
Q  364 aacaacttatgacatgtatttaagctattttcaagttatttctataagctctctaagatggcttatgaaaataactcttatcttatacgaaaac 457  Q
    |||||||||||||||||   || ||||||||||| ||||||| ||||||| || | |||  |||||||||| ||||  || |||||||||||||    
T  15515620 aacaacttatgacatgtcaatacgctattttcaatttatttccataagctatccatgataacttatgaaaacaacttatagcttatacgaaaac 15515527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 351 - 418
Target Start/End: Complemental strand, 15581346 - 15581279
Alignment:
Q  351 aagagctgatgggaacaacttatgacatgtatttaagctattttcaagttatttctataagctctcta 418  Q
    ||||||| |||| ||||||||||||||||| | |||||| ||||||   ||||||||||||| |||||    
T  15581346 aagagctaatggaaacaacttatgacatgtctataagctgttttcagcctatttctataagccctcta 15581279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 346 - 434
Target Start/End: Original strand, 33645934 - 33646021
Alignment:
Q  346 ttggaaagagctgatgggaacaacttatgacatgtatttaagctattttcaagttatttctataagctctctaagatggcttatgaaaa 434  Q
    ||||| |||||| |||| ||||||||||||||||| | |||| | |||| | |||||||| ||||||||||  |||| |||||||||||    
T  33645934 ttggagagagcttatggaaacaacttatgacatgtctataagttgtttttaggttatttccataagctctc-cagatagcttatgaaaa 33646021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 364 - 418
Target Start/End: Original strand, 12234880 - 12234934
Alignment:
Q  364 aacaacttatgacatgtatttaagctattttcaagttatttctataagctctcta 418  Q
    ||||||||||||||||| | |||||| ||||||  ||||||| ||||||||||||    
T  12234880 aacaacttatgacatgtctataagctgttttcagcttatttccataagctctcta 12234934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 359 - 436
Target Start/End: Complemental strand, 941624 - 941547
Alignment:
Q  359 atgggaacaacttatgacatgtatttaagctattttcaagttatttctataagctctctaagatggcttatgaaaata 436  Q
    |||| |||||||||||||||||   |||||  |||| || ||||||||||||||||||| |||| |||| | ||||||    
T  941624 atggaaacaacttatgacatgtccataagcagttttaaatttatttctataagctctctgagatagcttgttaaaata 941547  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 335 - 404
Target Start/End: Original strand, 13438621 - 13438690
Alignment:
Q  335 ttgtcagactattggaaagagctgatgggaacaacttatgacatgtatttaagctattttcaagttattt 404  Q
    |||| |||||||| | |||||||||||  |||||| |||||||| | | |||||||||||||| ||||||    
T  13438621 ttgtaagactatttggaagagctgatgaaaacaacctatgacatatctataagctattttcaacttattt 13438690  T

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