View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4834-Insertion-4 (Length: 775)

Name: NF4834-Insertion-4
Description: NF4834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4834-Insertion-4
NF4834-Insertion-4
[»] chr6 (11 HSPs)
chr6 (8-544)||(31106461-31106997)
chr6 (610-697)||(31106995-31107082)
chr6 (8-102)||(31094776-31094870)
chr6 (672-775)||(31106995-31107099)
chr6 (587-647)||(31107034-31107094)
chr6 (18-102)||(21181570-21181654)
chr6 (32-95)||(21150284-21150347)
chr6 (8-106)||(31050451-31050544)
chr6 (35-94)||(21267171-21267230)
chr6 (280-344)||(31050641-31050702)
chr6 (18-64)||(21190542-21190588)
[»] scaffold0202 (1 HSPs)
scaffold0202 (8-106)||(3488-3586)
[»] scaffold0016 (2 HSPs)
scaffold0016 (25-95)||(65187-65257)
scaffold0016 (22-69)||(62015-62062)
[»] scaffold0272 (1 HSPs)
scaffold0272 (18-69)||(3441-3492)


Alignment Details
Target: chr6 (Bit Score: 484; Significance: 0; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 8 - 544
Target Start/End: Original strand, 31106461 - 31106997
Alignment:
Q  8 ggaccatataatatgataatggtaaatacataatgcatttaaaatgattttgttaaatgtgatagtgtttcatgtgcatctaaaaaagtatcatcgtcac 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31106461 ggaccatataatatgataatggtaaatacataatgcatttaaaatgattttgttaaatgtgatagtgtttcatgtgcatctaaaaaagtatcatcgtcac 31106560  T
Q  108 tgtcacatacataagaggtgcactggtgttgaaattcctctcagacgtcttcttaatataaggtctaaaaaataacatgcaaattctcagcatacgaaga 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |    
T  31106561 tgtcacatacataagaggtgcactggtgttgaaattcctctcagacgtcttcttaatataaggtctaaaaaataatatacaaattctcagcatacgaata 31106660  T
Q  208 cctataaacaacaagaaactttggatctgtttggagataaaaaggttaatgggataatgaaaatatataaacatcttcatccaattgggacccaccattg 307  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  31106661 cctataaacaacaagaaactttggatctgttttgagataaaaaggttaatgggataatgaaaatatataagcatcttcatccaattgggacccaccattg 31106760  T
Q  308 agatgataataatactaagaaaagataactgaattgagaatgaagaataaatatcttggagnnnnnnncgagcgagtaggagaaagaagttataaccacc 407  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||    
T  31106761 agatgataataatactaggaaaagataactgaattgagaatgaagaataaatatcttggagaaaaaaacgagcgagtaggagaaagaagttataaccacc 31106860  T
Q  408 ttgtagcactcttcttgagtcccacatcgatgaatacttaaaatcatacaccaaagtttacctataaaataatattagtctatatctatacttcatatta 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31106861 ttgtagcactcttcttgagtcccacatcgatgaatacttaaaatcatacaccaaagtttacctataaaataatattagtctatatctatacttcatatta 31106960  T
Q  508 gtgtaaccgtttggaaccaattacttcgtgttcttca 544  Q
    |||||||||||||||||| ||||||| ||||||||||    
T  31106961 gtgtaaccgtttggaacctattactttgtgttcttca 31106997  T

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Target: chr6; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 610 - 697
Target Start/End: Original strand, 31106995 - 31107082
Alignment:
Q  610 tcaattagatttttcttcaaatttccaaagaaacattaagtggacaaaccttctttttgaagtcaattaaatttttcttcaaacttcc 697  Q
    ||||||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  31106995 tcaattagatttttcttcaaacttccaaaaaaacattaagtggacaaatcttctttttgaagtcaattagatttttcttcaaacttcc 31107082  T

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Target: chr6; HSP #3
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 8 - 102
Target Start/End: Complemental strand, 31094870 - 31094776
Alignment:
Q  8 ggaccatataatatgataatggtaaatacataatgcatttaaaatgattttgttaaatgtgatagtgtttcatgtgcatctaaaaaagtatcatc 102  Q
    ||||||||||||||||| |||| |||||||||||| |||||||||| |||||||||||| ||  ||| |||||||||||||||||||||||||||    
T  31094870 ggaccatataatatgatcatgggaaatacataatgtatttaaaatggttttgttaaatgcgacggtgcttcatgtgcatctaaaaaagtatcatc 31094776  T

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Target: chr6; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 672 - 775
Target Start/End: Original strand, 31106995 - 31107099
Alignment:
Q  672 tcaattaaatttttcttcaaacttccnnnnnnncattgagtgtgcaagccttctttttgaagtcaattagatttttcttcaaacttcc-aaaaaacatta 770  Q
    ||||||| ||||||||||||||||||       |||| ||||  |||  ||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  31106995 tcaattagatttttcttcaaacttccaaaaaaacattaagtggacaaatcttctttttgaagtcaattagatttttcttcaaacttccgaaaaaacatta 31107094  T
Q  771 ctccc 775  Q
    |||||    
T  31107095 ctccc 31107099  T

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Target: chr6; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 587 - 647
Target Start/End: Original strand, 31107034 - 31107094
Alignment:
Q  587 gtggacaaatcttctttttgaagtcaattagatttttcttcaaatttccaaagaaacatta 647  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||    
T  31107034 gtggacaaatcttctttttgaagtcaattagatttttcttcaaacttccgaaaaaacatta 31107094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 18 - 102
Target Start/End: Complemental strand, 21181654 - 21181570
Alignment:
Q  18 atatgataatggtaaatacataatgcatttaaaatgattttgttaaatgtgatagtgtttcatgtgcatctaaaaaagtatcatc 102  Q
    |||||||||||||||| |  ||||| ||| ||||||||| |||||||||||| | ||||||||| ||||||||||||| ||||||    
T  21181654 atatgataatggtaaacaattaatgtattaaaaatgattatgttaaatgtgacaatgtttcatgagcatctaaaaaagcatcatc 21181570  T

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Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 32 - 95
Target Start/End: Complemental strand, 21150347 - 21150284
Alignment:
Q  32 aatacataatgcatttaaaatgattttgttaaatgtgatagtgtttcatgtgcatctaaaaaag 95  Q
    |||| |||||| ||||||| ||||| |||||||||||| |||||||||||||||||||| ||||    
T  21150347 aatatataatgtatttaaattgattatgttaaatgtgagagtgtttcatgtgcatctaataaag 21150284  T

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Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 106
Target Start/End: Original strand, 31050451 - 31050544
Alignment:
Q  8 ggaccatataatatgataatggtaaatacataatgcatttaaaatgattttgttaaatgtgatagtgtttcatgtgcatctaaaaaagtatcatcgtca 106  Q
    |||||||||| |||||| || || ||||||||||| |||||||||| |||||||||     | |||| |||||||||||||||||||  ||||||||||    
T  31050451 ggaccatatagtatgatcatagttaatacataatgtatttaaaatggttttgttaa-----acagtgcttcatgtgcatctaaaaaaacatcatcgtca 31050544  T

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Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 35 - 94
Target Start/End: Complemental strand, 21267230 - 21267171
Alignment:
Q  35 acataatgcatttaaaatgattttgttaaatgtgatagtgtttcatgtgcatctaaaaaa 94  Q
    |||||||||||||||||||||| |||| || ||||  |||||| ||||||||||||||||    
T  21267230 acataatgcatttaaaatgattatgttgaaagtgacggtgttttatgtgcatctaaaaaa 21267171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 280 - 344
Target Start/End: Original strand, 31050641 - 31050702
Alignment:
Q  280 atcttcatccaattgggacccaccattgagatgataataatactaagaaaagataactgaattga 344  Q
    ||||||||||||   |||| |||||||||||| |||||||||||||||||||| || ||||||||    
T  31050641 atcttcatccaa---ggacacaccattgagataataataatactaagaaaagagaattgaattga 31050702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 21190588 - 21190542
Alignment:
Q  18 atatgataatggtaaatacataatgcatttaaaatgattttgttaaa 64  Q
    |||| ||||||| ||||||||||||  ||||||||||||||||||||    
T  21190588 atataataatggcaaatacataatgtgtttaaaatgattttgttaaa 21190542  T

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Target: scaffold0202 (Bit Score: 63; Significance: 6e-27; HSPs: 1)
Name: scaffold0202
Description:

Target: scaffold0202; HSP #1
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 8 - 106
Target Start/End: Complemental strand, 3586 - 3488
Alignment:
Q  8 ggaccatataatatgataatggtaaatacataatgcatttaaaatgattttgttaaatgtgatagtgtttcatgtgcatctaaaaaagtatcatcgtca 106  Q
    ||||| ||||||||||| |||| |||||||||||| |||||||||| ||||||||||||||  |||| ||||||||| |||||||||||||||||||||    
T  3586 ggaccttataatatgatcatgggaaatacataatgtatttaaaatggttttgttaaatgtggcagtgcttcatgtgcttctaaaaaagtatcatcgtca 3488  T

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Target: scaffold0016 (Bit Score: 51; Significance: 8e-20; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 25 - 95
Target Start/End: Original strand, 65187 - 65257
Alignment:
Q  25 aatggtaaatacataatgcatttaaaatgattttgttaaatgtgatagtgtttcatgtgcatctaaaaaag 95  Q
    ||||||||||| |||||| ||||| ||||||| ||||||||||||||||||||||||||||| ||||||||    
T  65187 aatggtaaatatataatgtatttacaatgattatgttaaatgtgatagtgtttcatgtgcatttaaaaaag 65257  T

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Target: scaffold0016; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 69
Target Start/End: Original strand, 62015 - 62062
Alignment:
Q  22 gataatggtaaatacataatgcatttaaaatgattttgttaaatgtga 69  Q
    ||||||||||||| ||| ||| |||| |||||||||||||||||||||    
T  62015 gataatggtaaattcatcatgtatttgaaatgattttgttaaatgtga 62062  T

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Target: scaffold0272 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0272
Description:

Target: scaffold0272; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 3441 - 3492
Alignment:
Q  18 atatgataatggtaaatacataatgcatttaaaatgattttgttaaatgtga 69  Q
    |||||||||| |||||||||||||| ||| ||||||||| ||||||||||||    
T  3441 atatgataattgtaaatacataatgtattcaaaatgattctgttaaatgtga 3492  T

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