View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4834-Insertion-6 (Length: 551)
Name: NF4834-Insertion-6
Description: NF4834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4834-Insertion-6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 379; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 7 - 414
Target Start/End: Complemental strand, 26603082 - 26602674
Alignment:
| Q |
7 |
attgctgtggtgcaatgtatggcttttttgggtacatgtgctgcaatgcattgctgtatagatattgattgatcgtgcacaaaacctggtaacagtatat |
106 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26603082 |
attgctgtggtgca-tgtatggcttttttgggtacatgtgctgcaatgcattgctgtatagatattgattgatcgtgcacaaaacctggtaacagtatat |
26602984 |
T |
|
| Q |
107 |
agtcatttatttaaacccttatcaaatccagtacactgtaatatctaaataaacataataataataatccagtacactgtatactgaacgaagatgatgg |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26602983 |
agtcatttatttaaacccttatcaaatccagtacactgtaatatctaaataaacataataataataatccagtacactgtatactgaacgaagatgatgg |
26602884 |
T |
|
| Q |
207 |
aca--tgttacacataaatgttagtgtgtgcgtgtgtaaaatctcagttccttgcagttgtacttatggatgcaaaccattatatttacacctcttcctt |
304 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26602883 |
acaaatgttacacataaatgttagtgtgtgcgtgtgtaaaatctcagttccttgcagttgtacttatggatgcaaaccattatatttacacctcttcctt |
26602784 |
T |
|
| Q |
305 |
acaactttctagcatttctcttccacttttttagaataaattttataaagtcaatttattcaaaagaaatttttatcattgcaaaataaaaaacacattt |
404 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
26602783 |
acaactttgtagcatttctcttccacttttttagaataaattttataaagtcaatttattcaaaagaaatttttatcaatgcaaaataaaaaacacattt |
26602684 |
T |
|
| Q |
405 |
aatagtttaa |
414 |
Q |
| |
|
||||| |||| |
|
|
| T |
26602683 |
aatagcttaa |
26602674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 411 - 551
Target Start/End: Complemental strand, 26602438 - 26602291
Alignment:
| Q |
411 |
ttaattcatagaaaccattgtactttgtatttacagcagttggaatgttggatgcaactctagtaatgaaggatatgaagaaggg-------tttctaaa |
503 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| || ||||||| |
|
|
| T |
26602438 |
ttaattcatagaaaccattgtactttgtatttacagcagttggaatgttggattcaactccagtaatgaaggatatgaagaatggtttctactttctaag |
26602339 |
T |
|
| Q |
504 |
ggaattcttagctgtagattttatttctaggagccaaaattttgtgta |
551 |
Q |
| |
|
||||||||||||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
26602338 |
ggaattcttagctgtagatattatttctaggaaccaaaattttgtgta |
26602291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 4e-27; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 223 - 312
Target Start/End: Complemental strand, 18746557 - 18746465
Alignment:
| Q |
223 |
tgttagtgtgtgcgtgtgtaaaatctcagttccttgcagttgtacttatggatgcaaaccatta---tatttacacctcttccttacaacttt |
312 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||| ||||||| |
|
|
| T |
18746557 |
tgttggtgtgtgcgtgtgtaaaatctcagttccttgcagttgtacttatggaagcaaatcattatattatttacacctcttccttgcaacttt |
18746465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 328 - 426
Target Start/End: Complemental strand, 18746388 - 18746289
Alignment:
| Q |
328 |
cacttttttagaataaattttataaagtc-aatttattcaaaagaaatttttatcattgcaaaataaaaaacacatttaatagtttaattcatagaaacc |
426 |
Q |
| |
|
|||||||||||| | ||||||||||| | |||||||||||||| |||||||||| ||| |||||||| |||||||||||||| ||| |||||||||||| |
|
|
| T |
18746388 |
cacttttttagagtcaattttataaaatttaatttattcaaaagtaatttttatctttgtaaaataaataacacatttaatagcttagttcatagaaacc |
18746289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 6e-26; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 221 - 312
Target Start/End: Original strand, 9390613 - 9390707
Alignment:
| Q |
221 |
aatgttagtgtgtgcgtgtgtaaaatctcagttccttgcagttgtacttatggatgcaaaccatta---tatttacacctcttccttacaacttt |
312 |
Q |
| |
|
|||||| |||||||||| |||||||||||||||||||||| ||||||||||||| ||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
9390613 |
aatgttggtgtgtgcgtctgtaaaatctcagttccttgcaattgtacttatggaagcaaatcattatattatttacacctcttccttacaacttt |
9390707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 222 - 312
Target Start/End: Original strand, 9390330 - 9390423
Alignment:
| Q |
222 |
atgttagtgtgtgcgtgtgtaaaatctcagttccttgcagttgtacttatggatgcaaaccatta---tatttacacctcttccttacaacttt |
312 |
Q |
| |
|
||||| ||||||| || |||||||||||||||||||||| |||||||||| || |||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
9390330 |
atgttggtgtgtgtgtctgtaaaatctcagttccttgcaattgtacttatagaaacaaatcattatattatttacacctcttccttacaacttt |
9390423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University