View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4834-Insertion-7 (Length: 529)
Name: NF4834-Insertion-7
Description: NF4834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4834-Insertion-7 |
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| [»] chr4 (6 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 495; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 8 - 529
Target Start/End: Complemental strand, 27564839 - 27564317
Alignment:
| Q |
8 |
tttccaactgcacaagtactaccacacgacatataatttaattgcaaactgatgagacattgttgtaaggtagaaatttcctataagtaatcacatgcct |
107 |
Q |
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| T |
27564839 |
tttccaactgcacaaatactaccacacgacatataatttaattgcaaactgatgagacattgttgtaaggtacaaatttcctataagtaatcacatgcct |
27564740 |
T |
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| Q |
108 |
tggcagttggtaaggaccctacacactttaattctcagttgaagttttcatcacttcaaagccatggaacacatgtacaccaaggatcttggtgtgtttt |
207 |
Q |
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| T |
27564739 |
tggcagttggtaaggaccctacacactttaattctcagttgaagttttcatcacttcaaagccatggaacacatgtacaccaaggatcttggtgtgtttt |
27564640 |
T |
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| Q |
208 |
tgttcactttaattttcttcatattaatgtttcttaaacacatttatgtgctatggacaatgtattatgtagttcaataatctgggaatggagtatgtgt |
307 |
Q |
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| T |
27564639 |
tgttcactttaattttcttcatattaatgtttcttaaacacatttatgtgctatggacaatgtattatgtagttcaataatctggaaatggagtatgtgt |
27564540 |
T |
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| Q |
308 |
atctttatcttatttcattggccagtgttgttgagacatgatcttgaaaatactttcattttctccagtaatgatttgcttctctttgatacagaaggga |
407 |
Q |
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| T |
27564539 |
atctttatcttatttcattggccagtgttgttgagacatgatcttgaaaacactttcattttctccagtaatgatttgcttctctttgatacagaaggga |
27564440 |
T |
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| Q |
408 |
tgtaaaaaaccatgtaagagttttacacattaggctttacattgtgagctataattgaattaca-gtgtaaaatttaatacactgacagtgcacagtcat |
506 |
Q |
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| T |
27564439 |
tgtaaaaaaccatgtaagagttttacacattaggctttacattgtgagctataattgaattacaggtgtaaaatttaatacactgacagtgcaaagtcat |
27564340 |
T |
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| Q |
507 |
tgacctctttatttatcatttta |
529 |
Q |
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| T |
27564339 |
tgacctctttatttatcatttta |
27564317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 163 - 529
Target Start/End: Original strand, 27584930 - 27585266
Alignment:
| Q |
163 |
tcaaagccatggaacacatgtacaccaaggatcttggtgtgtttttgttcactttaattttcttcatattaatgtttcttaaacacatttatgtgctatg |
262 |
Q |
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| T |
27584930 |
tcaaagccatgaaacacatgcataccaaggatcttagtgtgcttttgttcacttttatttccttcatattaatgtttcttaaacacattta--------- |
27585020 |
T |
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| Q |
263 |
gacaatgtattatgtagttcaataatctgggaatggagtatgtgtatctttatcttatttcattggccagtgttgt---tgagacatgatcttgaaaata |
359 |
Q |
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| T |
27585021 |
------------tgtagtttaaaaatctaggtatggagtatgtgtatctttatctgatttcagttgctagtcatgtgtttgcgacatgatcttgaaaaca |
27585108 |
T |
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| Q |
360 |
ctttcattttctccagtaatgatttgcttctctttgatacagaagggatgtaaaaaaccatgtaagagttttacacattaggctttacattgtgagctat |
459 |
Q |
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| T |
27585109 |
ctttcattttctcca---atgatttgatt--------tatagaatggatttaaaaaactatggaagagttt-acacattaggctttacacagtgagctat |
27585196 |
T |
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| Q |
460 |
aattgaattacagtgtaaaatttaatacactgacagtgcacagtcattgacctctttatttatcatttta |
529 |
Q |
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| T |
27585197 |
aattgaatgacagtgtaaaattgtacacacagacagtgcgcagtcattaacctctttatttatcatttta |
27585266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 93 - 173
Target Start/End: Original strand, 27427175 - 27427255
Alignment:
| Q |
93 |
agtaatcacatgccttggcagttggtaaggaccctacacactttaattctcagttgaagttttcatcacttcaaagccatg |
173 |
Q |
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| T |
27427175 |
agtaatcacatgacttggcagttggtaaggaccctacacacttgaactttcaggtgaagttttcatctcttcaaagtcatg |
27427255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 8 - 118
Target Start/End: Original strand, 27417786 - 27417896
Alignment:
| Q |
8 |
tttccaactgcacaagtactaccacacgacatataatttaattgcaaactgatgagacattgttgtaaggtagaaatttcctataagtaatcacatgcct |
107 |
Q |
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| T |
27417786 |
tttccaactgcacaagcactaccatgcaacatataattaaattgcaaactggtaagaaattgttgtaagctgggaatttcctataaacaaccacatgcct |
27417885 |
T |
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| Q |
108 |
tggcagttggt |
118 |
Q |
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| T |
27417886 |
tggtagttggt |
27417896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 7 - 130
Target Start/End: Complemental strand, 27568832 - 27568701
Alignment:
| Q |
7 |
atttccaactgcacaagtactaccacacgacatataatttaattgcaaactgatgaga---------cattgttgtaaggtagaaatttcctataagtaa |
97 |
Q |
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| T |
27568832 |
atttccaactgcacaagtactaccatgcaacatataatttaatt-caaactgatgagatatttttataattgttataaggtggaaattttctatatgtga |
27568734 |
T |
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| Q |
98 |
tcacatgccttggcagttggtaaggaccctaca |
130 |
Q |
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| T |
27568733 |
ccacatgctttggcagttggtaaggaccctaca |
27568701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 89
Target Start/End: Original strand, 27584840 - 27584922
Alignment:
| Q |
8 |
tttccaactgcacaagtactaccacacgacatata-atttaattgcaaactgatgagacattgttgtaaggtagaaatttcct |
89 |
Q |
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|||| ||||||||||||||||| ||| |||||| | |||||| |||||||||||||||||||| ||||| |||||||||| |
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| T |
27584840 |
tttctaactgcacaagtactacggcacaacatatgcacataattgaaaactgatgagacattgttgcaaggtggaaatttcct |
27584922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 103; Significance: 5e-51; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 204 - 398
Target Start/End: Original strand, 34588130 - 34588324
Alignment:
| Q |
204 |
tttttgttcactttaattttcttcatattaatgtttcttaaacacatttatgtgctatggacaatgtattatgtagttcaataatctgggaatggagtat |
303 |
Q |
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| T |
34588130 |
tttttgtttacttttattttctttgtattaatgtttcttaaacacatttatgtgttatgaaaaatgtattaagtagtttaaaaatctggttatgaagtat |
34588229 |
T |
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| Q |
304 |
gtgtatctttatcttatttcattggccagtgttgttgagacatgatcttgaaaatactttcattttctccagtaatgatttgcttctctttgata |
398 |
Q |
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| T |
34588230 |
gtgtatctttatctgatttcattggccattgtggttgcgacatgattttgaaaacaatttcattttctccaatgatggtttgcttctctttgata |
34588324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 52 - 197
Target Start/End: Original strand, 34587934 - 34588074
Alignment:
| Q |
52 |
caaactgatgagacattgttgtaaggtagaaatttcctataagtaatcacatgccttggcagttggt-aaggaccctacacactttaattctcagttgaa |
150 |
Q |
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|||| |||||||||||||||||||||| |||||| |||||| |||| | |||||||||||| ||| ||||||||||||| |||||||||||||| |
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| T |
34587934 |
caaagtgatgagacattgttgtaaggtggaaattgtctataa------acattctttggcagttggttaagcaccctacacacttcaattctcagttgaa |
34588027 |
T |
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| Q |
151 |
gttttcatcacttcaaagccatggaacacatgtacaccaaggatctt |
197 |
Q |
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| T |
34588028 |
gttttcatcacttgaaagctatggaacacatgcacaccaaggatctt |
34588074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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