View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4834-Insertion-8 (Length: 385)

Name: NF4834-Insertion-8
Description: NF4834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4834-Insertion-8
NF4834-Insertion-8
[»] chr3 (6 HSPs)
chr3 (8-355)||(4547860-4548202)
chr3 (95-365)||(3094756-3095026)
chr3 (95-362)||(3080322-3080589)
chr3 (174-305)||(3102353-3102484)
chr3 (174-308)||(3122478-3122612)
chr3 (167-275)||(1077316-1077424)
[»] chr8 (8 HSPs)
chr8 (157-306)||(15692659-15692808)
chr8 (100-330)||(15799785-15800015)
chr8 (147-306)||(15805364-15805523)
chr8 (100-330)||(15813167-15813397)
chr8 (103-305)||(15697281-15697483)
chr8 (147-330)||(15764383-15764566)
chr8 (142-308)||(15711988-15712154)
chr8 (142-256)||(15703699-15703813)
[»] chr2 (3 HSPs)
chr2 (166-275)||(2662479-2662588)
chr2 (169-296)||(2698501-2698628)
chr2 (175-275)||(2717106-2717206)
[»] chr5 (2 HSPs)
chr5 (166-230)||(27368659-27368723)
chr5 (217-275)||(487002-487060)
[»] chr4 (4 HSPs)
chr4 (169-277)||(31708193-31708301)
chr4 (216-277)||(31740589-31740650)
chr4 (169-257)||(14519920-14520008)
chr4 (166-198)||(47061874-47061906)
[»] chr1 (4 HSPs)
chr1 (166-230)||(6497782-6497846)
chr1 (166-230)||(47771006-47771070)
chr1 (165-230)||(6510735-6510800)
chr1 (166-242)||(6503116-6503192)
[»] scaffold0341 (2 HSPs)
scaffold0341 (165-230)||(12415-12480)
scaffold0341 (166-242)||(4795-4871)
[»] chr7 (2 HSPs)
chr7 (175-260)||(20263955-20264040)
chr7 (169-277)||(20294594-20294702)


Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-134; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 8 - 355
Target Start/End: Original strand, 4547860 - 4548202
Alignment:
Q  8 aaatcaacataatactaattagaatatagatcaatttagcatattaatttttgcaattaataattacatcttggattgaaagaattgacaaaaataacac 107  Q
    |||| ||||||||||||||| |||| | ||||||||||| |||| ||||||     | | |||||||||||||  ||||||| |||||||||||||||||    
T  4547860 aaataaacataatactaattggaatgtcgatcaatttagaatat-aattttc----taagtaattacatcttgagttgaaaggattgacaaaaataacac 4547954  T
Q  108 atactatgtgcccacaactcttcttgtgttttcttgactttgacctttttcaaatgcccttgccaatccaaaatcagatatttttggattcatctcttga 207  Q
    |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4547955 atactatgtgcccataattcttcttgtgttttcttgactttgacctttttcaaatgcccttgccaatccaaaatcagatatttttggattcatctcttga 4548054  T
Q  208 tctaagagaacattacttgcttttaggtctctatggattactcttagtctagagtcttcatgaagatacaagagtccttttgcaattccattgataatgt 307  Q
    ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  4548055 tctaaaagaacattacttgcttttaggtctctatggattactctaagtctagagtcttcatgaagatacaagagtccttttgcaattccattaataatgt 4548154  T
Q  308 tcagtcttaacttccaatctagaagttttctttcttcttcaactaaca 355  Q
    | |||||||| |||||||||||||||||||||| ||||||| ||||||    
T  4548155 ttagtcttaagttccaatctagaagttttcttttttcttcatctaaca 4548202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 95 - 365
Target Start/End: Complemental strand, 3095026 - 3094756
Alignment:
Q  95 acaaaaataacacatactatgtgcccacaactcttcttgtgttttcttgactttgacctttttcaaatgcccttgccaatccaaaatcagatatttttgg 194  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||||| |||  |||||||||||||||||||||||||||||||||||||||||||    
T  3095026 acaacaataacacatactatgtgccgacaactcttcttgtgttttcttgacattggtctttttcaaatgcccttgccaatccaaaatcagatatttttgg 3094927  T
Q  195 attcatctcttgatctaagagaacattacttgcttttaggtctctatggattactcttagtctagagtcttcatgaagatacaagagtccttttgcaatt 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3094926 attcatctcttgatctaagagaacattacttgcttttaggtctctatggattactcttagtctagagtcttcatgaagatacaagagtccttttgcaatt 3094827  T
Q  295 ccattgataatgttcagtcttaacttccaatctagaagttttctttcttcttcaactaacattcaagttac 365  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | | ||| |||||||| |||||||    
T  3094826 ccattgataatgttcagtcttaacttccaatctagaagttttctttttgcctcatctaacattaaagttac 3094756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 95 - 362
Target Start/End: Complemental strand, 3080589 - 3080322
Alignment:
Q  95 acaaaaataacacatactatgtgcccacaactcttcttgtgttttcttgactttgacctttttcaaatgcccttgccaatccaaaatcagatatttttgg 194  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||||| |||  |||||||||||||||||||||||||||||||||||||||||||    
T  3080589 acaacaataacacatactatgtgccgacaactcttcttgtgttttcttgacattggtctttttcaaatgcccttgccaatccaaaatcagatatttttgg 3080490  T
Q  195 attcatctcttgatctaagagaacattacttgcttttaggtctctatggattactcttagtctagagtcttcatgaagatacaagagtccttttgcaatt 294  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||    
T  3080489 attcatctcttgatctaatagaacattacttgcttttaggtctctatggattactctaagtctagagtcttcatgaaggtataagagtccttttgcaatt 3080390  T
Q  295 ccattgataatgttcagtcttaacttccaatctagaagttttctttcttcttcaactaacattcaagt 362  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||| ||| ||| |||||||| ||||    
T  3080389 ccattgataatgttcagccttaacttccaatccagaagttttcttttttcctcatctaacattaaagt 3080322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 174 - 305
Target Start/End: Complemental strand, 3102484 - 3102353
Alignment:
Q  174 tccaaaatcagatatttttggattcatctcttgatctaagagaacattacttgcttttaggtctctatggattactcttagtctagagtcttcatgaaga 273  Q
    ||||||||| || |||||||||||||| ||||||||||| |||| ||| || ||||| |||||||| || || ||||| || |||||||| |||||||||    
T  3102484 tccaaaatctgagatttttggattcatttcttgatctaatagaatattgctagctttcaggtctctgtgaataactctgagcctagagtcctcatgaaga 3102385  T
Q  274 tacaagagtccttttgcaattccattgataat 305  Q
    || |  || ||||| ||||| ||||| |||||    
T  3102384 tatagaagccctttagcaatcccattaataat 3102353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 174 - 308
Target Start/End: Complemental strand, 3122612 - 3122478
Alignment:
Q  174 tccaaaatcagatatttttggattcatctcttgatctaagagaacattacttgcttttaggtctctatggattactcttagtctagagtcttcatgaaga 273  Q
    |||||| || || |||||||||||||| || |||||||| | || ||| || ||||| |||||||| || || || || ||||||||||| || ||||||    
T  3122612 tccaaagtctgaaatttttggattcatttcatgatctaacaaaatattgctggctttcaggtctctgtgaataaccctgagtctagagtcctcgtgaaga 3122513  T
Q  274 tacaagagtccttttgcaattccattgataatgtt 308  Q
    || |  || ||||| ||||| ||||| ||||||||    
T  3122512 tagagtagccctttagcaatcccattaataatgtt 3122478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 275
Target Start/End: Complemental strand, 1077424 - 1077316
Alignment:
Q  167 ttgccaatccaaaatcagatatttttggattcatctcttgatctaagagaacattacttgcttttaggtctctatggattactcttagtctagagtcttc 266  Q
    ||||||| |||||||| ||||||||||||||||| || |  ||||| | || |||||||| |||||| |||| ||| || |  || | |||||| ||||     
T  1077424 ttgccaagccaaaatctgatatttttggattcatatcattgtctaataaaatattacttggttttagatctcgatgtatgatcctcaatctagaatcttg 1077325  T
Q  267 atgaagata 275  Q
    |||||||||    
T  1077324 atgaagata 1077316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 7e-34; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 157 - 306
Target Start/End: Original strand, 15692659 - 15692808
Alignment:
Q  157 tcaaatgcccttgccaatccaaaatcagatatttttggattcatctcttgatctaagagaacattacttgcttttaggtctctatggattactcttagtc 256  Q
    |||||||||||||||||||||||||| |||||||| |||||||| || |||||||| |||||||| || ||||| || |||||||| |||||||||| ||    
T  15692659 tcaaatgcccttgccaatccaaaatctgatattttgggattcatttcatgatctaatagaacattgctagctttgagatctctatgaattactcttaatc 15692758  T
Q  257 tagagtcttcatgaagatacaagagtccttttgcaattccattgataatg 306  Q
    ||||||| ||||| || || || || ||||| || |||||||||||||||    
T  15692759 tagagtcctcatggaggtataaaagacctttagctattccattgataatg 15692808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 100 - 330
Target Start/End: Original strand, 15799785 - 15800015
Alignment:
Q  100 aataacacatactatgtgcccacaactcttcttgtgttttcttgactttgacctttttcaaatgcccttgccaatccaaaatcagatatttttggattca 199  Q
    |||||||||||||| ||||| | ||||||| |||| |||   |||| |||  |||| |||||||  ||||||||||||||||| ||||||||||||||||    
T  15799785 aataacacatactaggtgccaaaaactctttttgtttttgtctgacattggtctttatcaaatgttcttgccaatccaaaatctgatatttttggattca 15799884  T
Q  200 tctcttgatctaagagaacattacttgcttttaggtctctatggattactcttagtctagagtcttcatgaagatacaagagtccttttgcaattccatt 299  Q
    | || | ||| |  |||||||| || ||||| || ||||| ||||||||||| |||| ||| || |||||||| || |  | |||| |||||||||||||    
T  15799885 tttcatcatccagaagaacattgctggctttcagatctctgtggattactctaagtcgagaatcctcatgaaggtatagcaatcctcttgcaattccatt 15799984  T
Q  300 gataatgttcagtcttaacttccaatctaga 330  Q
    ||||||| | |||| ||| ||||||||||||    
T  15799985 gataatgcttagtcgtaatttccaatctaga 15800015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 147 - 306
Target Start/End: Original strand, 15805364 - 15805523
Alignment:
Q  147 ttgacctttttcaaatgcccttgccaatccaaaatcagatatttttggattcatctcttgatctaagagaacattacttgcttttaggtctctatggatt 246  Q
    |||| |||||||||||  |||||| ||||||||||| ||||||||||||||||| || | |||||  |||||||| || ||||| || ||||| ||||||    
T  15805364 ttgatctttttcaaatctccttgctaatccaaaatctgatatttttggattcatttcatcatctagaagaacattgctggctttcagatctctgtggatt 15805463  T
Q  247 actcttagtctagagtcttcatgaagatacaagagtccttttgcaattccattgataatg 306  Q
    ||||| |||| ||| || |||||||| || |  |||||||||||||||||||||||||||    
T  15805464 actctaagtcgagaatcctcatgaaggtatagcagtccttttgcaattccattgataatg 15805523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 100 - 330
Target Start/End: Original strand, 15813167 - 15813397
Alignment:
Q  100 aataacacatactatgtgcccacaactcttcttgtgttttcttgactttgacctttttcaaatgcccttgccaatccaaaatcagatatttttggattca 199  Q
    |||||| | ||||| ||||| | ||||||| |||| |||   |||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  15813167 aataacccgtactaggtgccaataactctttttgtctttgtatgacattgatctttttcaaatgcccttgctaatccaaaatcagatatttttggattca 15813266  T
Q  200 tctcttgatctaagagaacattacttgcttttaggtctctatggattactcttagtctagagtcttcatgaagatacaagagtccttttgcaattccatt 299  Q
    | || | ||| |  |||||||| || ||||| || ||||| ||||||||||| |||  ||| || |||||||| || |  |||||| |||| ||||| ||    
T  15813267 tttcatcatccagaagaacattgctcgctttcagatctctgtggattactctaagtggagaatcctcatgaaggtatagaagtcctcttgcgattccttt 15813366  T
Q  300 gataatgttcagtcttaacttccaatctaga 330  Q
    ||||||| | |||| ||  ||||||||||||    
T  15813367 gataatgcttagtcgtagtttccaatctaga 15813397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 103 - 305
Target Start/End: Original strand, 15697281 - 15697483
Alignment:
Q  103 aacacatactatgtgcccacaactcttcttgtgttttcttgactttgacctttttcaaatgcccttgccaatccaaaatcagatatttttggattcatct 202  Q
    ||||| ||||| ||||| | ||||||| |||| |||   |||||||||||||||||||||  |||||| ||||||||||| |||||||| |||||||| |    
T  15697281 aacacttactaggtgccaataactctttttgtttttgtctgactttgacctttttcaaatttccttgctaatccaaaatctgatattttcggattcattt 15697380  T
Q  203 cttgatctaagagaacattacttgcttttaggtctctatggattactcttagtctagagtcttcatgaagatacaagagtccttttgcaattccattgat 302  Q
    | | ||| |  |||||||| || ||||| || ||||||||||| ||||| |||| ||| ||||  ||||| || || |||||| |||| |||||||||||    
T  15697381 catcatccagaagaacattgctggctttcagatctctatggataactctaagtcgagaatcttggtgaaggtataaaagtcctcttgcgattccattgat 15697480  T
Q  303 aat 305  Q
    |||    
T  15697481 aat 15697483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 147 - 330
Target Start/End: Original strand, 15764383 - 15764566
Alignment:
Q  147 ttgacctttttcaaatgcccttgccaatccaaaatcagatatttttggattcatctcttgatctaagagaacattacttgcttttaggtctctatggatt 246  Q
    |||| |||||||||||| |||||| || |||||||| ||||||||||||||||| || | ||| |  |||||||| || ||||| || || || ||||||    
T  15764383 ttgatctttttcaaatgtccttgctaacccaaaatctgatatttttggattcatttcatcatccagaagaacattgctagctttcagatccctgtggatt 15764482  T
Q  247 actcttagtctagagtcttcatgaagatacaagagtccttttgcaattccattgataatgttcagtcttaacttccaatctaga 330  Q
    ||||| |||| ||| || |||||||| || |  |||||||||||||||||| ||| |||| | |||| |||  |||||||||||    
T  15764483 actctaagtcgagaatcctcatgaaggtatagcagtccttttgcaattccagtgacaatgcttagtcgtaatctccaatctaga 15764566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 142 - 308
Target Start/End: Original strand, 15711988 - 15712154
Alignment:
Q  142 tgactttgacctttttcaaatgcccttgccaatccaaaatcagatatttttggattcatctcttgatctaagagaacattacttgcttttaggtctctat 241  Q
    |||||||| |||||||||||    |||||||||||||| || ||||||||||||||||| || |  || || || ||||| |||||||| |  |||||||    
T  15711988 tgactttggcctttttcaaaccttcttgccaatccaaagtctgatatttttggattcatttcatcgtccaaaagtacattgcttgctttcatatctctat 15712087  T
Q  242 ggattactcttagtctagagtcttcatgaagatacaagagtccttttgcaattccattgataatgtt 308  Q
    |||| ||||| |||| ||| || || |||||||| || |||||| |||| || || |||||||||||    
T  15712088 ggataactctaagtcgagaatcctcgtgaagatataacagtcctcttgctatcccgttgataatgtt 15712154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 142 - 256
Target Start/End: Original strand, 15703699 - 15703813
Alignment:
Q  142 tgactttgacctttttcaaatgcccttgccaatccaaaatcagatatttttggattcatctcttgatctaagagaacattacttgcttttaggtctctat 241  Q
    |||||||| ||||| ||||||   ||||||||||||||||| ||||||||||||||||| || | |||||  ||||| || |  ||||| ||||||||||    
T  15703699 tgactttggcctttctcaaattttcttgccaatccaaaatctgatatttttggattcatttcatcatctagaagaacgttgcaggctttaaggtctctat 15703798  T
Q  242 ggattactcttagtc 256  Q
    |||| ||||| ||||    
T  15703799 ggataactctaagtc 15703813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 166 - 275
Target Start/End: Original strand, 2662479 - 2662588
Alignment:
Q  166 cttgccaatccaaaatcagatatttttggattcatctcttgatctaagagaacattacttgcttttaggtctctatggattactcttagtctagagtctt 265  Q
    ||||||| |||||| ||||| |||||||||||||| ||   |||||| |||||||| ||||||||||| |||||||| |||| ||||||||| || |||     
T  2662479 cttgccattccaaagtcagaaatttttggattcatttcgccatctaaaagaacattgcttgcttttagatctctatgaattattcttagtcttgaatctc 2662578  T
Q  266 catgaagata 275  Q
     |||||||||    
T  2662579 tatgaagata 2662588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 169 - 296
Target Start/End: Original strand, 2698501 - 2698628
Alignment:
Q  169 gccaatccaaaatcagatatttttggattcatctcttgatctaagagaacattacttgcttttaggtctctatggattactcttagtctagagtcttcat 268  Q
    ||||| ||||| |||||||||||||||||||| | || |||||| | ||  |||||||||||||| |||| ||| |||| ||| ||||| || ||   ||    
T  2698501 gccaagccaaagtcagatatttttggattcatgttttcatctaacaaaatgttacttgcttttagatctcgatgaattattctgagtcttgaatcacgat 2698600  T
Q  269 gaagatacaagagtccttttgcaattcc 296  Q
    | ||||| | ||||||| ||||||||||    
T  2698601 gcagataaaggagtcctcttgcaattcc 2698628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 275
Target Start/End: Original strand, 2717106 - 2717206
Alignment:
Q  175 ccaaaatcagatatttttggattcatctcttgatctaagagaacattacttgcttttaggtctctatggattactcttagtctagagtcttcatgaagat 274  Q
    ||||| || ||||||||||||||||  |||  ||| || | || |||||| | |||||||||||||||||||| ||||| ||| || |||  ||||||||    
T  2717106 ccaaagtcggatatttttggattcagttctccatccaacaaaatattactcggttttaggtctctatggattattcttaatctcgaatctctatgaagat 2717205  T
Q  275 a 275  Q
    |    
T  2717206 a 2717206  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 230
Target Start/End: Original strand, 27368659 - 27368723
Alignment:
Q  166 cttgccaatccaaaatcagatatttttggattcatctcttgatctaagagaacattacttgcttt 230  Q
    ||||||||||||||||| ||||| || |||||||||||||  ||||| |||| ||| ||||||||    
T  27368659 cttgccaatccaaaatcggatatcttaggattcatctcttcgtctaaaagaatattgcttgcttt 27368723  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 275
Target Start/End: Original strand, 487002 - 487060
Alignment:
Q  217 acattacttgcttttaggtctctatggattactcttagtctagagtcttcatgaagata 275  Q
    ||||||||||||||||| |||||||| |||| |   |||||||| ||||||||||||||    
T  487002 acattacttgcttttagatctctatgtattatttgaagtctagaatcttcatgaagata 487060  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 277
Target Start/End: Complemental strand, 31708301 - 31708193
Alignment:
Q  169 gccaatccaaaatcagatatttttggattcatctcttgatctaagagaacattacttgcttttaggtctctatggattactcttagtctagagtcttcat 268  Q
    |||| ||||||||| ||||||||||| |||| ||  ||||| || | ||||||||||||||| || |||||||| || |  |||| || ||| |||| ||    
T  31708301 gccattccaaaatctgatatttttgggttcaacttgtgatccaacaaaacattacttgctttgagatctctatgaataatccttaatcgagaatcttgat 31708202  T
Q  269 gaagataca 277  Q
    |||||||||    
T  31708201 gaagataca 31708193  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 277
Target Start/End: Complemental strand, 31740650 - 31740589
Alignment:
Q  216 aacattacttgcttttaggtctctatggattactcttagtctagagtcttcatgaagataca 277  Q
    ||||||||||||||| |||||||||||||| | ||||| || ||| ||||  ||||||||||    
T  31740650 aacattacttgctttgaggtctctatggataattcttaatcgagaatcttggtgaagataca 31740589  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 257
Target Start/End: Original strand, 14519920 - 14520008
Alignment:
Q  169 gccaatccaaaatcagatatttttggattcatctcttgatctaagagaacattacttgcttttaggtctctatggattactcttagtct 257  Q
    ||||| ||||| |||||||||||||||||||| | || |||||| | ||  ||||||| |||||| |||| ||| |||| ||| |||||    
T  14519920 gccaagccaaagtcagatatttttggattcatgttttcatctaacaaaatgttacttggttttagatctcgatgaattattctgagtct 14520008  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 198
Target Start/End: Complemental strand, 47061906 - 47061874
Alignment:
Q  166 cttgccaatccaaaatcagatatttttggattc 198  Q
    |||||||||||||||||||||||||||| ||||    
T  47061906 cttgccaatccaaaatcagatatttttgcattc 47061874  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 230
Target Start/End: Original strand, 6497782 - 6497846
Alignment:
Q  166 cttgccaatccaaaatcagatatttttggattcatctcttgatctaagagaacattacttgcttt 230  Q
    |||||||  |||||||||||||| || |||||||| |||| |||||||||||  |||||||||||    
T  6497782 cttgccatgccaaaatcagatatcttaggattcatttcttcatctaagagaatgttacttgcttt 6497846  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 230
Target Start/End: Complemental strand, 47771070 - 47771006
Alignment:
Q  166 cttgccaatccaaaatcagatatttttggattcatctcttgatctaagagaacattacttgcttt 230  Q
    ||||||||||||||||||||||| || ||||||||||| |  ||||||||||  || ||||||||    
T  47771070 cttgccaatccaaaatcagatatcttaggattcatctcatcgtctaagagaatgttgcttgcttt 47771006  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 230
Target Start/End: Original strand, 6510735 - 6510800
Alignment:
Q  165 ccttgccaatccaaaatcagatatttttggattcatctcttgatctaagagaacattacttgcttt 230  Q
    ||||||||  |||||||||| ||| || ||||||||||||| ||| ||||||| ||| ||||||||    
T  6510735 ccttgccatgccaaaatcagctatcttaggattcatctcttcatccaagagaatattgcttgcttt 6510800  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 242
Target Start/End: Original strand, 6503116 - 6503192
Alignment:
Q  166 cttgccaatccaaaatcagatatttttggattcatctcttgatctaagagaacattacttgcttttaggtctctatg 242  Q
    |||||||  |||||||||| ||| || |||||||| | || ||| ||||||| |||||||||||| || ||||||||    
T  6503116 cttgccatgccaaaatcagctatcttaggattcatatgttcatccaagagaatattacttgctttgagatctctatg 6503192  T

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Target: scaffold0341 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 230
Target Start/End: Original strand, 12415 - 12480
Alignment:
Q  165 ccttgccaatccaaaatcagatatttttggattcatctcttgatctaagagaacattacttgcttt 230  Q
    ||||||||  |||||||||| ||| || ||||||||||||| ||| ||||||| ||| ||||||||    
T  12415 ccttgccatgccaaaatcagctatcttaggattcatctcttcatccaagagaatattgcttgcttt 12480  T

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Target: scaffold0341; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 242
Target Start/End: Original strand, 4795 - 4871
Alignment:
Q  166 cttgccaatccaaaatcagatatttttggattcatctcttgatctaagagaacattacttgcttttaggtctctatg 242  Q
    |||||||  |||||||||| ||| || |||||||| | || ||| ||||||| |||||||||||| || ||||||||    
T  4795 cttgccatgccaaaatcagctatcttaggattcatatgttcatccaagagaatattacttgctttgagatctctatg 4871  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 260
Target Start/End: Complemental strand, 20264040 - 20263955
Alignment:
Q  175 ccaaaatcagatatttttggattcatctcttgatctaagagaacattacttgcttttaggtctctatggattactcttagtctaga 260  Q
    ||||| || |||||||||||||||| ||| | |||||| |||||||||||||| || |  |||||||| || | |||||| |||||    
T  20264040 ccaaagtctgatatttttggattcaactcctcatctaacagaacattacttgccttcaaatctctatgaataattcttagcctaga 20263955  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 277
Target Start/End: Complemental strand, 20294702 - 20294594
Alignment:
Q  169 gccaatccaaaatcagatatttttggattcatctcttgatctaagagaacattacttgcttttaggtctctatggattactcttagtctagagtcttcat 268  Q
    |||| |||||| || |||||||||||||||| ||| | |||||| || ||||||||||| || |  |||||||| || | |||||| ||||| |||   |    
T  20294702 gccattccaaagtccgatatttttggattcagctcctcatctaacaggacattacttgccttcaaatctctatgaataattcttagcctagaatctcggt 20294603  T
Q  269 gaagataca 277  Q
    |||||||||    
T  20294602 gaagataca 20294594  T

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