View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4834_high_1 (Length: 580)
Name: NF4834_high_1
Description: NF4834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4834_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 142; Significance: 3e-74; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 196 - 407
Target Start/End: Original strand, 31069427 - 31069651
Alignment:
| Q |
196 |
gtacttgaagaactcacaactccaacattgactttgtatggactctgatcagcaagaaaagcttccgcaactccaaggattggatccttaggagctggct |
295 |
Q |
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| T |
31069427 |
gtacttgaagaactcacaactccaacattgactttgtatggactctgatcagcgagaaaagcttccgcaactccaaggattggatccttaggagctggct |
31069526 |
T |
|
| Q |
296 |
cgatattcttgaaccacgaagacatgaatct--------------agctccggttgagtagattacgaatcgccataactcgtgggaacttaatatgtan |
381 |
Q |
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|||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
31069527 |
cgatattcctgaaccacgaagacatgaatctagctccggcaacgaagctccggttgagtagattacgaatcgccataactcgtgggaactt-atatgtat |
31069625 |
T |
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| Q |
382 |
nnnnnngataaaataattcccactga |
407 |
Q |
| |
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|||||||||||||||||||| |
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| T |
31069626 |
ttttttgataaaataattcccactga |
31069651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 24 - 131
Target Start/End: Original strand, 31069255 - 31069362
Alignment:
| Q |
24 |
tgactcatatgaattggtttcctgcaattctcctctctgcttctctaacacattccaaaaccactggctttcctttatcattgcgatacgcacacttcta |
123 |
Q |
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||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
31069255 |
tgactcacatgaattggtttcctgcaattctcctctcagcttctctaacacattccaaaaccactggctttcctttatcattgtgatacgcacacttcta |
31069354 |
T |
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| Q |
124 |
tattttgc |
131 |
Q |
| |
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|||||||| |
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| T |
31069355 |
tattttgc |
31069362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 206 - 335
Target Start/End: Original strand, 31078051 - 31078180
Alignment:
| Q |
206 |
aactcacaactccaacattgactttgtatggactctgatcagcaagaaaagcttccgcaactccaaggattggatccttaggagctggctcgatattctt |
305 |
Q |
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|||| |||||||||||||| ||||||| |||||||||||| |||||||||||||| | |||||| ||||||||||||||||||||||| ||||| ||| | |
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| T |
31078051 |
aacttacaactccaacattaactttgtttggactctgatccgcaagaaaagcttcggtaactccgaggattggatccttaggagctggttcgatgttcct |
31078150 |
T |
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| Q |
306 |
gaaccacgaagacatgaatctagctccggt |
335 |
Q |
| |
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|||||| ||||||||||||||||||||||| |
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| T |
31078151 |
gaaccatgaagacatgaatctagctccggt |
31078180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 24 - 96
Target Start/End: Original strand, 31077722 - 31077794
Alignment:
| Q |
24 |
tgactcatatgaattggtttcctgcaattctcctctctgcttctctaacacattccaaaaccactggctttcc |
96 |
Q |
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||||||| ||||||||||||||||| || || |||||||||||||||||||||||||||||||| |||||||| |
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| T |
31077722 |
tgactcacatgaattggtttcctgcgatccttctctctgcttctctaacacattccaaaaccacaggctttcc |
31077794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 116; Significance: 1e-58; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 463 - 578
Target Start/End: Original strand, 16211429 - 16211544
Alignment:
| Q |
463 |
cagtgtgtaaagccgttggaagtggtgctaaacttataggcacgaattgtgacttctacaacttatgcacatgtacttacgatcatgaaccatatgatat |
562 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16211429 |
cagtgtgtaaagccgttggaagtggtgctaaacttataggcacgaattgtgacttctacaacttatgcacatgtacttacgatcatgaaccatatgatat |
16211528 |
T |
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| Q |
563 |
tgctctatgcgatatt |
578 |
Q |
| |
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|||||||||||||||| |
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| T |
16211529 |
tgctctatgcgatatt |
16211544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 463 - 578
Target Start/End: Original strand, 16220641 - 16220756
Alignment:
| Q |
463 |
cagtgtgtaaagccgttggaagtggtgctaaacttataggcacgaattgtgacttctacaacttatgcacatgtacttacgatcatgaaccatatgatat |
562 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |
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| T |
16220641 |
cagtgtgtaaagtcgttggaagtggtgctaaacttataggcacgaattgtgacttctacaacttatgcacctgtacttacgatcatcaaccatatgatat |
16220740 |
T |
|
| Q |
563 |
tgctctatgcgatatt |
578 |
Q |
| |
|
|| ||||||||||||| |
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| T |
16220741 |
tgatctatgcgatatt |
16220756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 463 - 578
Target Start/End: Original strand, 16215655 - 16215770
Alignment:
| Q |
463 |
cagtgtgtaaagccgttggaagtggtgctaaacttataggcacgaattgtgacttctacaacttatgcacatgtacttacgatcatgaaccatatgatat |
562 |
Q |
| |
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|||||||||||||| |||||| |||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||| || | |
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| T |
16215655 |
cagtgtgtaaagcctttggaaaaggtgttaaacttataggcacgaattgtgacttctacaatttatgcacttgtacttacgatcatctaccatataattt |
16215754 |
T |
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| Q |
563 |
tgctctatgcgatatt |
578 |
Q |
| |
|
|| ||||||||||||| |
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| T |
16215755 |
tgatctatgcgatatt |
16215770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 465 - 541
Target Start/End: Original strand, 16207245 - 16207321
Alignment:
| Q |
465 |
gtgtgtaaagccgttggaagtggtgctaaacttataggcacgaattgtgacttctacaacttatgcacatgtactta |
541 |
Q |
| |
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|||||| ||| | |||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||| |||| |
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| T |
16207245 |
gtgtgtcaagactttggaaaaggtgctaaacctataagcacgaattgtgacttctacaacttatgcacatgttctta |
16207321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 472 - 543
Target Start/End: Original strand, 16226027 - 16226098
Alignment:
| Q |
472 |
aagccgttggaagtggtgctaaacttataggcacgaattgtgacttctacaacttatgcacatgtacttacg |
543 |
Q |
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||||| ||||||| |||| ||||| |||||| ||| ||||||||||||||||||||||||||||||||||| |
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| T |
16226027 |
aagcctttggaagaggtgttaaacctataggatcgagttgtgacttctacaacttatgcacatgtacttacg |
16226098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 472 - 544
Target Start/End: Original strand, 16180949 - 16181021
Alignment:
| Q |
472 |
aagccgttggaagtggtgctaaacttataggcacgaattgtgacttctacaacttatgcacatgtacttacga |
544 |
Q |
| |
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||||| ||||||| |||| ||||| |||||| || |||||||||||||||||||||||||||||||||||| |
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| T |
16180949 |
aagcctttggaagaggtgttaaacctataggatggagttgtgacttctacaacttatgcacatgtacttacga |
16181021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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