View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4834_high_11 (Length: 314)

Name: NF4834_high_11
Description: NF4834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4834_high_11
NF4834_high_11
[»] chr3 (9 HSPs)
chr3 (84-314)||(54393019-54393252)
chr3 (36-88)||(44441597-44441649)
chr3 (36-87)||(10480323-10480374)
chr3 (14-68)||(54394183-54394237)
chr3 (154-187)||(44441863-44441896)
chr3 (42-86)||(1902287-1902331)
chr3 (42-86)||(1911733-1911777)
chr3 (36-88)||(21984433-21984485)
chr3 (60-88)||(54393416-54393444)
[»] scaffold0245 (2 HSPs)
scaffold0245 (150-235)||(8116-8199)
scaffold0245 (36-84)||(7852-7900)
[»] scaffold0229 (2 HSPs)
scaffold0229 (150-235)||(8444-8527)
scaffold0229 (36-84)||(8180-8228)
[»] chr1 (6 HSPs)
chr1 (150-235)||(1282436-1282519)
chr1 (150-235)||(1283467-1283550)
chr1 (36-88)||(46396670-46396722)
chr1 (36-84)||(1282172-1282220)
chr1 (36-84)||(1283203-1283251)
chr1 (154-213)||(46396397-46396456)
[»] chr4 (4 HSPs)
chr4 (156-232)||(47551721-47551797)
chr4 (150-235)||(47551825-47551910)
chr4 (51-88)||(26333291-26333328)
chr4 (51-88)||(47552154-47552191)
[»] chr8 (4 HSPs)
chr8 (36-88)||(1336106-1336158)
chr8 (158-235)||(1336370-1336448)
chr8 (36-88)||(3310487-3310539)
chr8 (154-231)||(16340563-16340640)
[»] chr5 (3 HSPs)
chr5 (36-88)||(22399508-22399560)
chr5 (39-88)||(15726821-15726869)
chr5 (36-88)||(29368437-29368489)
[»] chr2 (3 HSPs)
chr2 (36-88)||(42531056-42531108)
chr2 (38-88)||(42071356-42071405)
chr2 (39-79)||(6885111-6885151)


Alignment Details
Target: chr3 (Bit Score: 183; Significance: 5e-99; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 84 - 314
Target Start/End: Complemental strand, 54393252 - 54393019
Alignment:
Q  84 tttgtgataaatgatgataagtatcggtcaagtgataaattatttgtgataaatgtggtctatgtgattaatacattatactaccaataaaattgtttca 183  Q
    |||| |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  54393252 tttgagatatatgatgataagtatcggtcaagagataaattatttgtgataaatgtggtctatgtgattaatacattatactaccaataaaattgtttct 54393153  T
Q  184 aaaatctttgtgtgggcacaagctcacaaactatacaacatgcatccgtcccag-tccctcgcattattcagttatgaaatagaaaaagagttgtatcaa 282  Q
    |||| |||||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  54393152 aaaaactttgtgtcggcacaagcccacaaactatacaacatgcatccgtcccagctccctcgcattattcagttatgaaatagaaaaagagttgtatcaa 54393053  T
Q  283 aattagt--tatattttaagccaaatactttaac 314  Q
    |||||||  ||||||| |||||||||||||||||    
T  54393052 aattagttatatatttcaagccaaatactttaac 54393019  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 36 - 88
Target Start/End: Original strand, 44441597 - 44441649
Alignment:
Q  36 agtgacggattcagaatttttgaatagtgggggcactatatataaaaatttgt 88  Q
    |||||||||| ||| ||||||||||||||| ||||||||||||||||||||||    
T  44441597 agtgacggatccaggatttttgaatagtggaggcactatatataaaaatttgt 44441649  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 36 - 87
Target Start/End: Original strand, 10480323 - 10480374
Alignment:
Q  36 agtgacggattcagaatttttgaatagtgggggcactatatataaaaatttg 87  Q
    |||||||||||||  ||||||||||||||| ||||| |||||||||||||||    
T  10480323 agtgacggattcatgatttttgaatagtggaggcaccatatataaaaatttg 10480374  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 54394237 - 54394183
Alignment:
Q  14 agatcccaaacctatccttcggagtgacggattcagaatttttgaatagtggggg 68  Q
    ||||||||| ||| ||| || ||||||||||| ||| ||||||||||||||||||    
T  54394237 agatcccaagcctctccctctgagtgacggatccaggatttttgaatagtggggg 54394183  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 187
Target Start/End: Original strand, 44441863 - 44441896
Alignment:
Q  154 atacattatactaccaataaaattgtttcaaaaa 187  Q
    ||||||||||||||||||||||||||||| ||||    
T  44441863 atacattatactaccaataaaattgtttctaaaa 44441896  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 86
Target Start/End: Complemental strand, 1902331 - 1902287
Alignment:
Q  42 ggattcagaatttttgaatagtgggggcactatatataaaaattt 86  Q
    |||| ||| |||||||||||||||| |||| ||||||||||||||    
T  1902331 ggatccaggatttttgaatagtgggtgcaccatatataaaaattt 1902287  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 86
Target Start/End: Complemental strand, 1911777 - 1911733
Alignment:
Q  42 ggattcagaatttttgaatagtgggggcactatatataaaaattt 86  Q
    |||| ||| |||||||||||||||| |||| ||||||||||||||    
T  1911777 ggatccaggatttttgaatagtgggtgcaccatatataaaaattt 1911733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 88
Target Start/End: Complemental strand, 21984485 - 21984433
Alignment:
Q  36 agtgacggattcagaatttttgaatagtgggggcactatatataaaaatttgt 88  Q
    ||||||||| |||| |||||||| || ||||||||  ||||||||||||||||    
T  21984485 agtgacggaatcaggatttttgattattgggggcatcatatataaaaatttgt 21984433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 88
Target Start/End: Complemental strand, 54393444 - 54393416
Alignment:
Q  60 tagtgggggcactatatataaaaatttgt 88  Q
    |||||||||||||||||||||||||||||    
T  54393444 tagtgggggcactatatataaaaatttgt 54393416  T

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Target: scaffold0245 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: scaffold0245
Description:

Target: scaffold0245; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 150 - 235
Target Start/End: Original strand, 8116 - 8199
Alignment:
Q  150 attaatacattatactaccaataaaattgtttcaaaaatctttgtgtgggcacaagctcacaaactatacaacatgcatccgtccc 235  Q
    ||||||||||||||||||||| ||||||||||| ||||   |||||||||||||||| |||||| | |||||| ||||||||||||    
T  8116 attaatacattatactaccaaaaaaattgtttctaaaa--attgtgtgggcacaagcccacaaattctacaacctgcatccgtccc 8199  T

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Target: scaffold0245; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 36 - 84
Target Start/End: Original strand, 7852 - 7900
Alignment:
Q  36 agtgacggattcagaatttttgaatagtgggggcactatatataaaaat 84  Q
    |||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  7852 agtgacggatccaggatttttgaatagtgggggcactatatataaaaat 7900  T

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Target: scaffold0229 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 150 - 235
Target Start/End: Original strand, 8444 - 8527
Alignment:
Q  150 attaatacattatactaccaataaaattgtttcaaaaatctttgtgtgggcacaagctcacaaactatacaacatgcatccgtccc 235  Q
    ||||||||||||||||||||| ||||||||||| ||||   |||||||||||||||| |||||| | |||||| ||||||||||||    
T  8444 attaatacattatactaccaaaaaaattgtttctaaaa--attgtgtgggcacaagcccacaaattctacaacctgcatccgtccc 8527  T

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Target: scaffold0229; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 36 - 84
Target Start/End: Original strand, 8180 - 8228
Alignment:
Q  36 agtgacggattcagaatttttgaatagtgggggcactatatataaaaat 84  Q
    |||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  8180 agtgacggatccaggatttttgaatagtgggggcactatatataaaaat 8228  T

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Target: chr1 (Bit Score: 47; Significance: 8e-18; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 150 - 235
Target Start/End: Original strand, 1282436 - 1282519
Alignment:
Q  150 attaatacattatactaccaataaaattgtttcaaaaatctttgtgtgggcacaagctcacaaactatacaacatgcatccgtccc 235  Q
    ||||||||||||||||||||| ||||||||||| ||||   |||||||||||||||| |||||| | |||||| ||||||||||||    
T  1282436 attaatacattatactaccaaaaaaattgtttctaaaa--attgtgtgggcacaagcccacaaattctacaacctgcatccgtccc 1282519  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 150 - 235
Target Start/End: Original strand, 1283467 - 1283550
Alignment:
Q  150 attaatacattatactaccaataaaattgtttcaaaaatctttgtgtgggcacaagctcacaaactatacaacatgcatccgtccc 235  Q
    ||||||||||||||||||||| ||||||||||| ||||   |||||||||||||||| |||||| | |||||| ||||||||||||    
T  1283467 attaatacattatactaccaaaaaaattgtttctaaaa--attgtgtgggcacaagcccacaaattctacaacctgcatccgtccc 1283550  T

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Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 36 - 88
Target Start/End: Complemental strand, 46396722 - 46396670
Alignment:
Q  36 agtgacggattcagaatttttgaatagtgggggcactatatataaaaatttgt 88  Q
    |||||||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  46396722 agtgacggatccaggatttttgaatagtgggggcactatatataaaaatttgt 46396670  T

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Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 36 - 84
Target Start/End: Original strand, 1282172 - 1282220
Alignment:
Q  36 agtgacggattcagaatttttgaatagtgggggcactatatataaaaat 84  Q
    |||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  1282172 agtgacggatccaggatttttgaatagtgggggcactatatataaaaat 1282220  T

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Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 36 - 84
Target Start/End: Original strand, 1283203 - 1283251
Alignment:
Q  36 agtgacggattcagaatttttgaatagtgggggcactatatataaaaat 84  Q
    |||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  1283203 agtgacggatccaggatttttgaatagtgggggcactatatataaaaat 1283251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 154 - 213
Target Start/End: Complemental strand, 46396456 - 46396397
Alignment:
Q  154 atacattatactaccaataaaattgtttcaaaaatctttgtgtgggcacaagctcacaaa 213  Q
    ||||||||||||||||| ||||||||||| ||||  ||||||||||||||||| ||||||    
T  46396456 atacattatactaccaaaaaaattgtttctaaaaattttgtgtgggcacaagcccacaaa 46396397  T

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Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 156 - 232
Target Start/End: Complemental strand, 47551797 - 47551721
Alignment:
Q  156 acattatactacc-aataaaattgtttcaaaaatctttgtgtgggcacaagctcacaaactatacaacatgcatccgt 232  Q
    ||||||||||||| || ||||||||| |||||| |||||||||||||||||| |||||||| ||||||||||||||||    
T  47551797 acattatactacctaaaaaaattgtt-caaaaaactttgtgtgggcacaagcccacaaactctacaacatgcatccgt 47551721  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 150 - 235
Target Start/End: Complemental strand, 47551910 - 47551825
Alignment:
Q  150 attaatacattatactaccaataaaattgtttcaaaaatctttgtgtgggcacaagctcacaaactatacaacatgcatccgtccc 235  Q
    |||| |||||||||  ||||| ||||| ||||| |||| |||||||||||||||||| |||||||| ||||||||| ||| |||||    
T  47551910 attagtacattatataaccaaaaaaatggtttctaaaaactttgtgtgggcacaagcccacaaactctacaacatgtatctgtccc 47551825  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 51 - 88
Target Start/End: Complemental strand, 26333328 - 26333291
Alignment:
Q  51 atttttgaatagtgggggcactatatataaaaatttgt 88  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  26333328 atttttgaatagtcggggcactatatataaaaatttgt 26333291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 51 - 88
Target Start/End: Complemental strand, 47552191 - 47552154
Alignment:
Q  51 atttttgaatagtgggggcactatatataaaaatttgt 88  Q
    |||||||||||||||| |||||||||||||||||||||    
T  47552191 atttttgaatagtgggagcactatatataaaaatttgt 47552154  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 36 - 88
Target Start/End: Original strand, 1336106 - 1336158
Alignment:
Q  36 agtgacggattcagaatttttgaatagtgggggcactatatataaaaatttgt 88  Q
    |||||||||| ||| ||||||||||||||||||||||| ||||||||||||||    
T  1336106 agtgacggatccaggatttttgaatagtgggggcactacatataaaaatttgt 1336158  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 158 - 235
Target Start/End: Original strand, 1336370 - 1336448
Alignment:
Q  158 attatactaccaataaaa-ttgtttcaaaaatctttgtgtgggcacaagctcacaaactatacaacatgcatccgtccc 235  Q
    ||||||||||||| |||| ||||||| |||| |||||||||||||||||| ||||| || | |||||||||||| ||||    
T  1336370 attatactaccaaaaaaaattgtttctaaaaactttgtgtgggcacaagcccacaagctctccaacatgcatccatccc 1336448  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 36 - 88
Target Start/End: Original strand, 3310487 - 3310539
Alignment:
Q  36 agtgacggattcagaatttttgaatagtgggggcactatatataaaaatttgt 88  Q
    |||||| ||| |||||||||||||| ||||||||||||||||| |||||||||    
T  3310487 agtgactgatccagaatttttgaatggtgggggcactatatatgaaaatttgt 3310539  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 231
Target Start/End: Original strand, 16340563 - 16340640
Alignment:
Q  154 atacattatactaccaataaaattgtttcaaaaatctttgtgtgggcacaagctcacaaactatacaacatgcatccg 231  Q
    |||||||||||||| || |||||| |||| |||| |||||||| | ||||||| | |||||| || ||| ||||||||    
T  16340563 atacattatactactaaaaaaattatttctaaaaactttgtgtagccacaagcccgcaaactctataacgtgcatccg 16340640  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 36 - 88
Target Start/End: Complemental strand, 22399560 - 22399508
Alignment:
Q  36 agtgacggattcagaatttttgaatagtgggggcactatatataaaaatttgt 88  Q
    |||||||||| ||| |||||||||||||||| |||||||||||||||||||||    
T  22399560 agtgacggatccaggatttttgaatagtgggcgcactatatataaaaatttgt 22399508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 88
Target Start/End: Original strand, 15726821 - 15726869
Alignment:
Q  39 gacggattcagaatttttgaatagtgggggcactatatataaaaatttgt 88  Q
    |||||||||||||||||| |||||| ||||||| ||||| ||||||||||    
T  15726821 gacggattcagaattttttaatagt-ggggcaccatataaaaaaatttgt 15726869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 88
Target Start/End: Original strand, 29368437 - 29368489
Alignment:
Q  36 agtgacggattcagaatttttgaatagtgggggcactatatataaaaatttgt 88  Q
    ||||||||| |||| |||||||| || ||||||||  ||||||||||||||||    
T  29368437 agtgacggaatcaggatttttgattattgggggcatcatatataaaaatttgt 29368489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 88
Target Start/End: Complemental strand, 42531108 - 42531056
Alignment:
Q  36 agtgacggattcagaatttttgaatagtgggggcactatatataaaaatttgt 88  Q
    ||||||| |||||| ||||||||||||||||||||  |||||| |||||||||    
T  42531108 agtgacgaattcaggatttttgaatagtgggggcatcatatatgaaaatttgt 42531056  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 88
Target Start/End: Original strand, 42071356 - 42071405
Alignment:
Q  38 tgacggattcagaatttttgaatagtgggggcactatatataaaaatttgt 88  Q
    |||||||| || || ||||||||||||||| ||||||||||||||||||||    
T  42071356 tgacggatccataagttttgaatagtgggg-cactatatataaaaatttgt 42071405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 79
Target Start/End: Complemental strand, 6885151 - 6885111
Alignment:
Q  39 gacggattcagaatttttgaatagtgggggcactatatata 79  Q
    ||||||||||||| ||||||||| ||||||||| |||||||    
T  6885151 gacggattcagaaattttgaataatgggggcacaatatata 6885111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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