View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4834_high_13 (Length: 301)
Name: NF4834_high_13
Description: NF4834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4834_high_13 |
 | |
|
| [»] scaffold0475 (1 HSPs) |
| | |
|
| [»] scaffold0288 (1 HSPs) |
| | |
|
| [»] scaffold0199 (1 HSPs) |
| | |
|
| [»] scaffold0477 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 2 - 290
Target Start/End: Complemental strand, 24104645 - 24104357
Alignment:
| Q |
2 |
atgctgtgttgattccagctccatttcaaggtcatatcaatgcattgttcaaactaggaaagcttcttcatcttaaaggctttcacataacctttgtgaa |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| ||||| |
|
|
| T |
24104645 |
atgctgtgttgattccagctccatttcaaggtcatatcaatgcattgttcaaactaggaaagcttcttcaccttagaggctttcacataaccttcgtgaa |
24104546 |
T |
|
| Q |
102 |
caccgaatacaatcagaaacgcttgctcgaatcaagagatcctaattcttttgatggtttcaatgactttaactttgagaccataccagatggtctaact |
201 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24104545 |
caccgaatacaatcacaaacgcttgctcgaatcaagagatcctaattctcttgatggtttcaatgactttaactttgagaccataccagatggtctaact |
24104446 |
T |
|
| Q |
202 |
ccaatggaaggcaatggtgatgttactcaagacatataccctcttgtgcaatcaatcatgacgaacttccttcagcccttcgatgaact |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
24104445 |
ccaatggaaggcaatggtgatgttactcaagacatataccctcttgtgcaatcaatcatgacgaacttccttcagccctttgatgaact |
24104357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 225; Significance: 1e-124; HSPs: 28)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 2 - 290
Target Start/End: Original strand, 4265635 - 4265923
Alignment:
| Q |
2 |
atgctgtgttgattccagctccatttcaaggtcatatcaatgcattgttcaaactaggaaagcttcttcatcttaaaggctttcacataacctttgtgaa |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||| || |
|
|
| T |
4265635 |
atgctgtgttgattccagctccatttcaaggccatatcaatgcattgttcaatctaggaaagcttcttcaccttagaggctttcacataacctttgtcaa |
4265734 |
T |
|
| Q |
102 |
caccgaatacaatcagaaacgcttgctcgaatcaagagatcctaattcttttgatggtttcaatgactttaactttgagaccataccagatggtctaact |
201 |
Q |
| |
|
||| ||||||||||| |||||||||||| ||||||||| ||| |||||| |||||||||||| ||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
4265735 |
cactgaatacaatcacaaacgcttgctcaaatcaagaggtccaaattctcttgatggtttcagtgactttaagtttgagaccataccagatggtctaact |
4265834 |
T |
|
| Q |
202 |
ccaatggaaggcaatggtgatgttactcaagacatataccctcttgtgcaatcaatcatgacgaacttccttcagcccttcgatgaact |
290 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
4265835 |
ccaatggaaggcaatggtgatgctactcaagacatataccctcttgtgcaatcaatcatgacgaacttccttcaaccctttgatgaact |
4265923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 2 - 237
Target Start/End: Complemental strand, 4623857 - 4623622
Alignment:
| Q |
2 |
atgctgtgttgattccagctccatttcaaggtcatatcaatgcattgttcaaactaggaaagcttcttcatcttaaaggctttcacataacctttgtgaa |
101 |
Q |
| |
|
|||||||||||||| || |||| ||||||||||||||||| ||||||||||||||| |||||||||| | ||||||||||||||||||||||||| | |
|
|
| T |
4623857 |
atgctgtgttgattgcatatccagttcaaggtcatatcaatccattgttcaaactagcaaagcttctttaccttaaaggctttcacataacctttggtca |
4623758 |
T |
|
| Q |
102 |
caccgaatacaatcagaaacgcttgctcgaatcaagagatcctaattcttttgatggtttcaatgactttaactttgagaccataccagatggtctaact |
201 |
Q |
| |
|
||||||||||||||| |||||||||||| ||||||||| ||| || | ||||||||||||| |||||||||||||||||||| ||||||||| |||| |
|
|
| T |
4623757 |
caccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaggcctttgatggtttcacggactttaactttgagaccattccagatggtttaaca |
4623658 |
T |
|
| Q |
202 |
ccaatggaaggcaatggtgatgttactcaagacata |
237 |
Q |
| |
|
||||||||||| |||||||||||| |||||||||| |
|
|
| T |
4623657 |
ccaatggaaggtgatggtgatgttagtcaagacata |
4623622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 6 - 233
Target Start/End: Complemental strand, 4618847 - 4618620
Alignment:
| Q |
6 |
tgtgttgattccagctccatttcaaggtcatatcaatgcattgttcaaactaggaaagcttcttcatcttaaaggctttcacataacctttgtgaacacc |
105 |
Q |
| |
|
|||| |||||||| |||| ||||||| ||||||||| ||||||||||||||| |||||||||||| |||| ||||||||||||||||||||| |||||| |
|
|
| T |
4618847 |
tgtgatgattccatatccagttcaaggccatatcaatccattgttcaaactagcaaagcttcttcaccttagaggctttcacataacctttgttaacacc |
4618748 |
T |
|
| Q |
106 |
gaatacaatcagaaacgcttgctcgaatcaagagatcctaattcttttgatggtttcaatgactttaactttgagaccataccagatggtctaactccaa |
205 |
Q |
| |
|
||||||||||| |||||||||||| ||||||||| ||| || ||||||||||||||| |||||||||||||||| ||| ||||||||| |||| |||| |
|
|
| T |
4618747 |
gaatacaatcacaaacgcttgctcaaatcaagaggtccaaaggcttttgatggtttcacggactttaactttgagagcattccagatggtttaacaccaa |
4618648 |
T |
|
| Q |
206 |
tggaaggcaatggtgatgttactcaaga |
233 |
Q |
| |
|
||||||| |||||||||||| |||||| |
|
|
| T |
4618647 |
tggaaggtgatggtgatgttagtcaaga |
4618620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 2 - 237
Target Start/End: Complemental strand, 4594560 - 4594325
Alignment:
| Q |
2 |
atgctgtgttgattccagctccatttcaaggtcatatcaatgcattgttcaaactaggaaagcttcttcatcttaaaggctttcacataacctttgtgaa |
101 |
Q |
| |
|
||||||||||||||||||||||| ||||||| ||||| ||| ||||||||||||| | ||| |||||||| |||| ||| ||||||||||||||||| || |
|
|
| T |
4594560 |
atgctgtgttgattccagctccacttcaaggacatataaatccattgttcaaacttgcaaaacttcttcaccttagaggatttcacataacctttgtcaa |
4594461 |
T |
|
| Q |
102 |
caccgaatacaatcagaaacgcttgctcgaatcaagagatcctaattcttttgatggtttcaatgactttaactttgagaccataccagatggtctaact |
201 |
Q |
| |
|
||| ||||||||||| ||||| |||||| ||||||||| ||| ||| | || ||||||||| || |||| |||||| |||||||||||||||||||| |
|
|
| T |
4594460 |
cactgaatacaatcataaacgtttgctcaaatcaagaggtccaaatgccttagatggtttccctggttttagctttgaaaccataccagatggtctaaca |
4594361 |
T |
|
| Q |
202 |
ccaatggaaggcaatggtgatgttactcaagacata |
237 |
Q |
| |
|
||||||||||| |||||||||||| |||||||||| |
|
|
| T |
4594360 |
ccaatggaaggtgatggtgatgttagtcaagacata |
4594325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 2 - 226
Target Start/End: Complemental strand, 4507461 - 4507237
Alignment:
| Q |
2 |
atgctgtgttgattccagctccatttcaaggtcatatcaatgcattgttcaaactaggaaagcttcttcatcttaaaggctttcacataacctttgtgaa |
101 |
Q |
| |
|
||||||||||||||||| |||| |||||| ||||||||| ||||||||||||||| ||||||||||| ||| ||||||||||||||||||||| || |
|
|
| T |
4507461 |
atgctgtgttgattccatatccaactcaaggccatatcaatccattgttcaaactagctaagcttcttcaccttcgaggctttcacataacctttgttaa |
4507362 |
T |
|
| Q |
102 |
caccgaatacaatcagaaacgcttgctcgaatcaagagatcctaattcttttgatggtttcaatgactttaactttgagaccataccagatggtctaact |
201 |
Q |
| |
|
||||||||||||||| |||||||||||| ||||||||| | ||| | ||||||||||||| ||| |||||||||||||| ||||||||||| ||||| |
|
|
| T |
4507361 |
caccgaatacaatcacaaacgcttgctcaaatcaagaggtgaaaatgcctttgatggtttcactgattttaactttgagactctaccagatggtttaact |
4507262 |
T |
|
| Q |
202 |
ccaatggaaggcaatggtgatgtta |
226 |
Q |
| |
|
|||||||| || |||||||||||| |
|
|
| T |
4507261 |
ccaatggatggtgatggtgatgtta |
4507237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 2 - 290
Target Start/End: Complemental strand, 4471464 - 4471179
Alignment:
| Q |
2 |
atgctgtgttgattccagctccatttcaaggtcatatcaatgcattgttcaaactaggaaagcttcttcatcttaaaggctttcacataacctttgtgaa |
101 |
Q |
| |
|
||||||| ||||||||| |||| |||||| ||||||||||||||||| ||||||| |||||||||||| |||| ||||||||||||||| ||||| || |
|
|
| T |
4471464 |
atgctgtattgattccatgtccagctcaaggccatatcaatgcattgttgaaactagcaaagcttcttcaccttagaggctttcacataacgtttgtcaa |
4471365 |
T |
|
| Q |
102 |
caccgaatacaatcagaaacgcttgctcgaatcaagagatcctaattcttttgatggtttcaatgactttaactttgagaccataccagatggtctaact |
201 |
Q |
| |
|
||| ||||||||||| ||| ||||||| | ||||||| |||| ||||| |||||||||||| ||||||||||||||||||||| ||| ||||| | ||| |
|
|
| T |
4471364 |
cactgaatacaatcacaaagccttgctcaattcaagaggtcctgattctcttgatggtttcactgactttaactttgagaccattccaaatggttttact |
4471265 |
T |
|
| Q |
202 |
ccaatggaaggcaatggtgatgttactcaagacatataccctcttgtgcaatcaatcatgacgaacttccttcagcccttcgatgaact |
290 |
Q |
| |
|
|||||||| | ||||||| ||| |||||||||| || | || | | ||||||||||||| |||||||||| ||||| | |||||| |
|
|
| T |
4471264 |
gcaatggaa---agtggtgatcttattcaagacatacactccttttttcgatcaatcatgacggacttccttcaaccctttggtgaact |
4471179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 21 - 269
Target Start/End: Complemental strand, 4575986 - 4575738
Alignment:
| Q |
21 |
tccatttcaaggtcatatcaatgcattgttcaaactaggaaagcttcttcatcttaaaggctttcacataacctttgtgaacaccgaatacaatcagaaa |
120 |
Q |
| |
|
|||| ||||||| ||||||||||||||||| ||| ||| ||| || ||||| |||| ||||||||||||||||||||| ||||| ||||||||||| ||| |
|
|
| T |
4575986 |
tccagttcaaggccatatcaatgcattgttgaaaatagcaaaactgcttcaccttagaggctttcacataacctttgttaacactgaatacaatcacaaa |
4575887 |
T |
|
| Q |
121 |
cgcttgctcgaatcaagagatcctaattcttttgatggtttcaatgactttaactttgagaccataccagatggtctaactccaatggaaggcaatggtg |
220 |
Q |
| |
|
|| |||||| ||||||||| | ||| | ||||||||||||| |||||||||||||||||| |||||||||||| ||||||||| ||| || ||||||| |
|
|
| T |
4575886 |
cgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcactgactttaactttgagactataccagatggtttaactccaaaggatggtaatggtg |
4575787 |
T |
|
| Q |
221 |
atgttactcaagacatataccctcttgtgcaatcaatcatgacgaactt |
269 |
Q |
| |
|
|||| | ||||||| || || |||||| |||||||||| |||||||| |
|
|
| T |
4575786 |
atgtaagtcaagacctacactctcttggtgaatcaatcataacgaactt |
4575738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 21 - 236
Target Start/End: Complemental strand, 4517871 - 4517656
Alignment:
| Q |
21 |
tccatttcaaggtcatatcaatgcattgttcaaactaggaaagcttcttcatcttaaaggctttcacataacctttgtgaacaccgaatacaatcagaaa |
120 |
Q |
| |
|
|||| ||||||| ||||||||| | ||||| ||||||| ||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||| |
|
|
| T |
4517871 |
tccacttcaaggccatatcaatccgttgttaaaactagcaaaacttcttcatcttagaggctttcacataacctttgtcaacaccgaatacaatcacaaa |
4517772 |
T |
|
| Q |
121 |
cgcttgctcgaatcaagagatcctaattcttttgatggtttcaatgactttaactttgagaccataccagatggtctaactccaatggaaggcaatggtg |
220 |
Q |
| |
|
|| |||||| ||||||||| ||| || | ||||||||||||| ||| |||| ||||||||| || ||||||||| ||||||| || |||||| |||||| |
|
|
| T |
4517771 |
cgtttgctcaaatcaagaggtccaaaagcctttgatggtttcactgattttacctttgagactattccagatggtttaactccgatagaaggcgatggtg |
4517672 |
T |
|
| Q |
221 |
atgttactcaagacat |
236 |
Q |
| |
|
|||||| ||||||||| |
|
|
| T |
4517671 |
atgttagtcaagacat |
4517656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 21 - 234
Target Start/End: Complemental strand, 3173534 - 3173321
Alignment:
| Q |
21 |
tccatttcaaggtcatatcaatgcattgttcaaactaggaaagcttcttcatcttaaaggctttcacataacctttgtgaacaccgaatacaatcagaaa |
120 |
Q |
| |
|
|||| ||||||| ||||||||||||||||| ||||||| ||| || ||||| ||| ||||||||||||||||||||| ||||| ||||||||||| ||| |
|
|
| T |
3173534 |
tccagttcaaggccatatcaatgcattgttgaaactagcaaaactacttcactttagaggctttcacataacctttgtaaacactgaatacaatcacaaa |
3173435 |
T |
|
| Q |
121 |
cgcttgctcgaatcaagagatcctaattcttttgatggtttcaatgactttaactttgagaccataccagatggtctaactccaatggaaggcaatggtg |
220 |
Q |
| |
|
|| |||||| |||||| | ||| ||| | ||||||||||||||||| |||||||||||||| |||||||||||| ||||| |||||||||| |||||| |
|
|
| T |
3173434 |
cggttgctcaaatcaaagggtccaaatgcctttgatggtttcaatgattttaactttgagactataccagatggtttaacttcaatggaaggtgatggtg |
3173335 |
T |
|
| Q |
221 |
atgttactcaagac |
234 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
3173334 |
atgttagtcaagac |
3173321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 2 - 239
Target Start/End: Complemental strand, 4581564 - 4581327
Alignment:
| Q |
2 |
atgctgtgttgattccagctccatttcaaggtcatatcaatgcattgttcaaactaggaaagcttcttcatcttaaaggctttcacataacctttgtgaa |
101 |
Q |
| |
|
|||| |||||||||||| |||| ||||||| ||||||| | |||| | | ||||| |||||||||||| |||| ||||||||||||||||||||| || |
|
|
| T |
4581564 |
atgcagtgttgattccatatccacttcaaggacatatcactccattaataacactagcaaagcttcttcaccttagaggctttcacataacctttgtcaa |
4581465 |
T |
|
| Q |
102 |
caccgaatacaatcagaaacgcttgctcgaatcaagagatcctaattcttttgatggtttcaatgactttaactttgagaccataccagatggtctaact |
201 |
Q |
| |
|
||||||||||||||| |||||||||||| ||||||||| ||| || | ||||||||||||| || |||| ||||||||| || ||||||||| ||||| |
|
|
| T |
4581464 |
caccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaagcgtttgatggtttcaccgattttacctttgagactattccagatggtttaact |
4581365 |
T |
|
| Q |
202 |
ccaatggaaggcaatggtgatgttactcaagacatata |
239 |
Q |
| |
|
|| || |||||| || ||||||||| |||||||||||| |
|
|
| T |
4581364 |
ccgatagaaggcgatagtgatgttaatcaagacatata |
4581327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 2 - 290
Target Start/End: Complemental strand, 4627700 - 4627412
Alignment:
| Q |
2 |
atgctgtgttgattccagctccatttcaaggtcatatcaatgcattgttcaaactaggaaagcttcttcatcttaaaggctttcacataacctttgtgaa |
101 |
Q |
| |
|
||||||||||||||||| |||| ||||||| ||||||||| ||||||| | ||||| ||| | ||||| |||| ||||||||||||||||||||| || |
|
|
| T |
4627700 |
atgctgtgttgattccatttccacttcaaggccatatcaatccattgttgatactagcaaaattacttcaccttagaggctttcacataacctttgtcaa |
4627601 |
T |
|
| Q |
102 |
caccgaatacaatcagaaacgcttgctcgaatcaagagatcctaattcttttgatggtttcaatgactttaactttgagaccataccagatggtctaact |
201 |
Q |
| |
|
||| ||||||||||| ||||| |||||| ||||||||| | ||| | |||||||||||| |||| |||| |||||||||||||||||||||| |||| |
|
|
| T |
4627600 |
cactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcgatgattttacctttgagaccataccagatggtttaaca |
4627501 |
T |
|
| Q |
202 |
ccaatggaaggcaatggtgatgttactcaagacatataccctcttgtgcaatcaatcatgacgaacttccttcagcccttcgatgaact |
290 |
Q |
| |
|
||| | ||||| |||| |||||||||||||||||| ||||| |||||||| | | |||||||||||||||||| | |||||| |
|
|
| T |
4627500 |
ccactagaaggtgatggcgatgttactcaagacataccatctctttcccaatcaataagaaagaacttccttcagccctttggtgaact |
4627412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 2 - 220
Target Start/End: Original strand, 4513557 - 4513775
Alignment:
| Q |
2 |
atgctgtgttgattccagctccatttcaaggtcatatcaatgcattgttcaaactaggaaagcttcttcatcttaaaggctttcacataacctttgtgaa |
101 |
Q |
| |
|
||||||||||||||||| |||| ||||||| ||||||||| || |||||| | ||| ||| || ||||| |||| ||||||||||||||||||||| || |
|
|
| T |
4513557 |
atgctgtgttgattccatatccacttcaaggccatatcaatccaatgttcagattagcaaaactacttcaccttagaggctttcacataacctttgttaa |
4513656 |
T |
|
| Q |
102 |
caccgaatacaatcagaaacgcttgctcgaatcaagagatcctaattcttttgatggtttcaatgactttaactttgagaccataccagatggtctaact |
201 |
Q |
| |
|
||||||||||||||| ||||| |||||| ||||||||| ||||||| ||||||||||||||| || ||| ||||||||| || || |||||| ||||| |
|
|
| T |
4513657 |
caccgaatacaatcacaaacgtttgctcaaatcaagaggtcctaatgcttttgatggtttcaccgattttcgctttgagactattcctgatggtttaact |
4513756 |
T |
|
| Q |
202 |
ccaatggaaggcaatggtg |
220 |
Q |
| |
|
|||||||| ||| |||||| |
|
|
| T |
4513757 |
ccaatggatggcgatggtg |
4513775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 2 - 195
Target Start/End: Complemental strand, 4462757 - 4462564
Alignment:
| Q |
2 |
atgctgtgttgattccagctccatttcaaggtcatatcaatgcattgttcaaactaggaaagcttcttcatcttaaaggctttcacataacctttgtgaa |
101 |
Q |
| |
|
||||||||||||||||| ||||| ||||| ||||||||||||||||| ||||||||||| || ||||| |||| ||| ||||||||||||||||| || |
|
|
| T |
4462757 |
atgctgtgttgattccatgtccatcccaaggccatatcaatgcattgttgaaactaggaaaactacttcaccttagaggttttcacataacctttgtcaa |
4462658 |
T |
|
| Q |
102 |
caccgaatacaatcagaaacgcttgctcgaatcaagagatcctaattcttttgatggtttcaatgactttaactttgagaccataccagatggt |
195 |
Q |
| |
|
||| ||||||||||| || |||||||| | ||||||| |||||||||| | |||||||||| ||||||||||||||||||||| ||| ||||| |
|
|
| T |
4462657 |
cactgaatacaatcacaattgcttgctcaattcaagaggtcctaattctctagatggtttcactgactttaactttgagaccattccaaatggt |
4462564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 2 - 269
Target Start/End: Complemental strand, 4482415 - 4482148
Alignment:
| Q |
2 |
atgctgtgttgattccagctccatttcaaggtcatatcaatgcattgttcaaactaggaaagcttcttcatcttaaaggctttcacataacctttgtgaa |
101 |
Q |
| |
|
|||| ||||||| |||| |||| |||||| ||||||||||||||||| ||| ||||||| || ||||| |||| ||||||||||||||||||||| || |
|
|
| T |
4482415 |
atgcagtgttgactccatttccagctcaaggccatatcaatgcattgttgaaaataggaaaactacttcaccttagaggctttcacataacctttgtcaa |
4482316 |
T |
|
| Q |
102 |
caccgaatacaatcagaaacgcttgctcgaatcaagagatcctaattcttttgatggtttcaatgactttaactttgagaccataccagatggtctaact |
201 |
Q |
| |
|
||||||||||||||| ||||| ||||| ||||||| | ||| || | ||||||||||||| ||| |||| |||||| || |||||||||||| ||||| |
|
|
| T |
4482315 |
caccgaatacaatcacaaacgtttgctaaaatcaaggggtccaaaagcctttgatggtttcactgattttacctttgaaacgataccagatggtttaact |
4482216 |
T |
|
| Q |
202 |
ccaatggaaggcaatggtgatgttactcaagacatataccctcttgtgcaatcaatcatgacgaactt |
269 |
Q |
| |
|
||||| ||||| ||| ||| || | ||||||| ||| | ||||| |||||||||||||||||||| |
|
|
| T |
4482215 |
ccaattgaaggtgatgatgaagtaagtcaagacttattctctcttactcaatcaatcatgacgaactt |
4482148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 2 - 234
Target Start/End: Original strand, 4258754 - 4258986
Alignment:
| Q |
2 |
atgctgtgttgattccagctccatttcaaggtcatatcaatgcattgttcaaactaggaaagcttcttcatcttaaaggctttcacataacctttgtgaa |
101 |
Q |
| |
|
||||||||||||||||| |||| |||||| ||||||||| ||||||||||||||| ||||||||||| ||||||| ||||||||||||||||| || |
|
|
| T |
4258754 |
atgctgtgttgattccatatccagctcaaggccatatcaatccattgttcaaactagctaagcttcttcactttaaaggttttcacataacctttgtcaa |
4258853 |
T |
|
| Q |
102 |
caccgaatacaatcagaaacgcttgctcgaatcaagagatcctaattcttttgatggtttcaatgactttaactttgagaccataccagatggtctaact |
201 |
Q |
| |
|
||| ||||| ||||| ||||| |||||| ||||||||| | ||| | |||||||||||| ||| |||| ||||||||| || | ||||||||| ||| |
|
|
| T |
4258854 |
cactgaatataatcacaaacgtttgctcaaatcaagaggtgaaaatgccgttgatggtttcattgattttacctttgagactattcaagatggtctgact |
4258953 |
T |
|
| Q |
202 |
ccaatggaaggcaatggtgatgttactcaagac |
234 |
Q |
| |
|
||| ||||||| |||| ||||||||||||||| |
|
|
| T |
4258954 |
ccagtggaaggtgatggcgatgttactcaagac |
4258986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 21 - 205
Target Start/End: Original strand, 4488794 - 4488978
Alignment:
| Q |
21 |
tccatttcaaggtcatatcaatgcattgttcaaactaggaaagcttcttcatcttaaaggctttcacataacctttgtgaacaccgaatacaatcagaaa |
120 |
Q |
| |
|
|||| ||||||| ||||||||||||||||| ||||||||||| || ||||| |||| ||| ||||||||||||||||| ||||| ||||||||||| ||| |
|
|
| T |
4488794 |
tccagttcaaggccatatcaatgcattgttgaaactaggaaaactacttcaccttagaggatttcacataacctttgtcaacactgaatacaatcacaaa |
4488893 |
T |
|
| Q |
121 |
cgcttgctcgaatcaagagatcctaattcttttgatggtttcaatgactttaactttgagaccataccagatggtctaactccaa |
205 |
Q |
| |
|
||||||||| ||||||||| ||| ||| | ||||||||||| | ||| |||| ||||||||| || ||||||||| ||||||||| |
|
|
| T |
4488894 |
cgcttgctcaaatcaagaggtccaaatgcctttgatggtttaactgattttagctttgagactattccagatggtttaactccaa |
4488978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 82 - 234
Target Start/End: Original strand, 4502951 - 4503103
Alignment:
| Q |
82 |
tttcacataacctttgtgaacaccgaatacaatcagaaacgcttgctcgaatcaagagatcctaattcttttgatggtttcaatgactttaactttgaga |
181 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||||| ||| ||| | ||||||||||||||||| |||| |||||||| |
|
|
| T |
4502951 |
tttcacataacctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcctttgatggtttcaatgattttacctttgaga |
4503050 |
T |
|
| Q |
182 |
ccataccagatggtctaactccaatggaaggcaatggtgatgttactcaagac |
234 |
Q |
| |
|
|||||||||||||| ||||||| ||||||| |||||||||||| ||||||| |
|
|
| T |
4503051 |
ccataccagatggtttaactccggtggaaggtgatggtgatgttagtcaagac |
4503103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 2 - 233
Target Start/End: Complemental strand, 4565579 - 4565348
Alignment:
| Q |
2 |
atgctgtgttgattccagctccatttcaaggtcatatcaatgcattgttcaaactaggaaagcttcttcatcttaaaggctttcacataacctttgtgaa |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||| | ||| |||||||| |||| ||| ||||| ||||||||||| || |
|
|
| T |
4565579 |
atgctgtgttgattccagctccatttcaaggacatataaatccattgttcaaacttgcaaaacttcttcaccttagaggatttcatataacctttgtcaa |
4565480 |
T |
|
| Q |
102 |
caccgaatacaatcagaaacgcttgctcgaatcaagagatcctaattcttttgatggtttcaatgactttaactttgagaccataccagatggtctaact |
201 |
Q |
| |
|
||| ||||||||||| ||||| ||||| ||||||||| ||| ||| | || ||||||| | || ||| |||||| |||||||||||||||||||| |
|
|
| T |
4565479 |
cactgaatacaatcataaacgattgctaaaatcaagaggtccaaatgccttagatggttcccgtggtttttgctttgaaaccataccagatggtctaaca |
4565380 |
T |
|
| Q |
202 |
ccaatggaaggcaatggtgatgttactcaaga |
233 |
Q |
| |
|
|| || ||||| |||||||||||| |||||| |
|
|
| T |
4565379 |
ccgatagaaggtgatggtgatgttagtcaaga |
4565348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 21 - 269
Target Start/End: Complemental strand, 4562193 - 4561945
Alignment:
| Q |
21 |
tccatttcaaggtcatatcaatgcattgttcaaactaggaaagcttcttcatcttaaaggctttcacataa-cctttgtgaacaccgaatacaatcagaa |
119 |
Q |
| |
|
|||| ||||||||||||||||||||||||| ||| ||| ||| || ||||| || | |||||||||||||| ||||||| ||||| ||||||||||| || |
|
|
| T |
4562193 |
tccagttcaaggtcatatcaatgcattgttgaaaatagcaaaactgcttcacctaagaggctttcacataaacctttgttaacactgaatacaatcacaa |
4562094 |
T |
|
| Q |
120 |
acgcttgctcgaatcaagagatcctaattcttttgatggtttcaatgactttaactttgagaccataccagatggtctaactccaatggaaggcaatggt |
219 |
Q |
| |
|
||| ||||| ||||||||| | ||| | ||||||||||||| |||||||||||||||||| |||||||||||| ||||||||| ||| || ||||| |
|
|
| T |
4562093 |
acgtttgcta-aatcaagaggtgaaaatgcctttgatggtttcactgactttaactttgagactataccagatggtttaactccaaaggatggtgatggt |
4561995 |
T |
|
| Q |
220 |
gatgttactcaagacatataccctcttgtgcaatcaatcatgacgaactt |
269 |
Q |
| |
|
||| ||| ||||||| || || |||||| |||||||||| |||||||| |
|
|
| T |
4561994 |
gatattagtcaagacctacactctcttggtgaatcaatcataacgaactt |
4561945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 2 - 223
Target Start/End: Original strand, 4612296 - 4612517
Alignment:
| Q |
2 |
atgctgtgttgattccagctccatttcaaggtcatatcaatgcattgttcaaactaggaaagcttcttcatcttaaaggctttcacataacctttgtgaa |
101 |
Q |
| |
|
|||| ||||| |||||| |||| ||||||| ||||||||| |||| ||||||||| ||| |||||||| |||| ||||||||||||||| || || || |
|
|
| T |
4612296 |
atgcagtgttaattccatatccagttcaaggccatatcaatccattaatcaaactagcaaaacttcttcaccttagaggctttcacataacattcgtcaa |
4612395 |
T |
|
| Q |
102 |
caccgaatacaatcagaaacgcttgctcgaatcaagagatcctaattcttttgatggtttcaatgactttaactttgagaccataccagatggtctaact |
201 |
Q |
| |
|
||||||||||||||| |||||||||||| ||||||||| ||| ||| | |||| |||||||| ||| |||| ||||||| | ||||||||||||||| || |
|
|
| T |
4612396 |
caccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcctttgttggtttcactgattttacctttgaggctataccagatggtctacct |
4612495 |
T |
|
| Q |
202 |
ccaatggaaggcaatggtgatg |
223 |
Q |
| |
|
||| |||||| ||||||||| |
|
|
| T |
4612496 |
tcaaacgaaggcgatggtgatg |
4612517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 2 - 246
Target Start/End: Complemental strand, 4558675 - 4558431
Alignment:
| Q |
2 |
atgctgtgttgattccagctccatttcaaggtcatatcaatgcattgttcaaactaggaaagcttcttcatcttaaaggctttcacataacctttgtgaa |
101 |
Q |
| |
|
|||||||||| |||||| |||| ||||||| ||||||||| ||||||| ||||||| ||| |||||||| |||| ||| ||||||||||||| ||| || |
|
|
| T |
4558675 |
atgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaactagcaaaacttcttcaccttagaggatttcacataacctatgtaaa |
4558576 |
T |
|
| Q |
102 |
caccgaatacaatcagaaacgcttgctcgaatcaagagatcctaattcttttgatggtttcaatgactttaactttgagaccataccagatggtctaact |
201 |
Q |
| |
|
||| |||||||| || ||||| |||||| | ||||||| ||| ||| | ||||||||||||| ||| |||| ||||||||| || || |||||| ||||| |
|
|
| T |
4558575 |
cactgaatacaaccacaaacggttgctcaagtcaagaggtccaaatgcctttgatggtttcactgattttagctttgagactattccggatggtttaact |
4558476 |
T |
|
| Q |
202 |
ccaatggaaggcaatggtgatgttactcaagacatataccctctt |
246 |
Q |
| |
|
|||| ||| || |||| ||||||| ||||||||| ||| ||||| |
|
|
| T |
4558475 |
ccaacggatggtgatggcgatgttagtcaagacatttacgctctt |
4558431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 2 - 246
Target Start/End: Complemental strand, 4587182 - 4586938
Alignment:
| Q |
2 |
atgctgtgttgattccagctccatttcaaggtcatatcaatgcattgttcaaactaggaaagcttcttcatcttaaaggctttcacataacctttgtgaa |
101 |
Q |
| |
|
|||||||||| || ||| ||||| ||||||| ||||||||| ||||||| ||||||| || |||||||| ||| ||| ||||||||||||||||| || |
|
|
| T |
4587182 |
atgctgtgttaatcccatctccagttcaaggccatatcaatccattgttgaaactagctaaacttcttcaccttcgaggatttcacataacctttgtaaa |
4587083 |
T |
|
| Q |
102 |
caccgaatacaatcagaaacgcttgctcgaatcaagagatcctaattcttttgatggtttcaatgactttaactttgagaccataccagatggtctaact |
201 |
Q |
| |
|
||| ||||||||||| ||||| ||||| | ||||||| ||| ||| | ||||||| ||| | ||| |||| ||||||||| || ||||||||| ||||| |
|
|
| T |
4587082 |
cactgaatacaatcacaaacggttgcttaagtcaagagctccaaatgcctttgatgatttaactgattttagctttgagactattccagatggtttaact |
4586983 |
T |
|
| Q |
202 |
ccaatggaaggcaatggtgatgttactcaagacatataccctctt |
246 |
Q |
| |
|
|||| ||| || |||||||||||| ||||||||| ||| ||||| |
|
|
| T |
4586982 |
ccaacggatggtgatggtgatgttagtcaagacatttacgctctt |
4586938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 2 - 233
Target Start/End: Complemental strand, 4603660 - 4603429
Alignment:
| Q |
2 |
atgctgtgttgattccagctccatttcaaggtcatatcaatgcattgttcaaactaggaaagcttcttcatcttaaaggctttcacataacctttgtgaa |
101 |
Q |
| |
|
||||||||||||||||| |||| ||||||| ||||||||| || |||| ||||||| ||| || |||| |||| ||| ||||||||||||||||| || |
|
|
| T |
4603660 |
atgctgtgttgattccatatccacttcaaggccatatcaatccaatgttgaaactagcaaaactatttcaccttagaggatttcacataacctttgtcaa |
4603561 |
T |
|
| Q |
102 |
caccgaatacaatcagaaacgcttgctcgaatcaagagatcctaattcttttgatggtttcaatgactttaactttgagaccataccagatggtctaact |
201 |
Q |
| |
|
||||||||||||||| ||||| |||||| ||||||||| ||||||| | || || || |||| ||| |||| |||||| || || |||||||| ||||| |
|
|
| T |
4603560 |
caccgaatacaatcacaaacgtttgctcaaatcaagaggtcctaatgccttagacggcttcactgattttagctttgaaacaatcccagatggactaaca |
4603461 |
T |
|
| Q |
202 |
ccaatggaaggcaatggtgatgttactcaaga |
233 |
Q |
| |
|
|| |||||||| ||| | |||||| |||||| |
|
|
| T |
4603460 |
ccgatggaaggtgatgataatgttagtcaaga |
4603429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 50 - 237
Target Start/End: Complemental strand, 4599665 - 4599478
Alignment:
| Q |
50 |
tcaaactaggaaagcttcttcatcttaaaggctttcacataacctttgtgaacaccgaatacaatcagaaacgcttgctcgaatcaagagatcctaattc |
149 |
Q |
| |
|
||||||||| |||| ||||||| |||| ||| ||| |||||||||| ||||||||||| |||||||| |||||||||||| ||||||||| ||||||||| |
|
|
| T |
4599665 |
tcaaactagcaaagattcttcaccttagaggattttacataaccttcgtgaacaccgagtacaatcacaaacgcttgctcaaatcaagaggtcctaattc |
4599566 |
T |
|
| Q |
150 |
ttttgatggtttcaatgactttaactttgagaccataccagatggtctaactccaatggaaggcaatggtgatgttactcaagacata |
237 |
Q |
| |
|
| | ||||||||| ||| ||| ||| ||||| || ||||||||| |||||||||| || || ||||||||||||| || |||||| |
|
|
| T |
4599565 |
tcgtaatggtttcactgatttttccttcgagactattccagatggtttaactccaatagatggtgatggtgatgttacacaggacata |
4599478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 2 - 246
Target Start/End: Complemental strand, 4572516 - 4572272
Alignment:
| Q |
2 |
atgctgtgttgattccagctccatttcaaggtcatatcaatgcattgttcaaactaggaaagcttcttcatcttaaaggctttcacataacctttgtgaa |
101 |
Q |
| |
|
|||||||||| || ||| |||| ||||||| ||||||||| ||||||| |||||| ||| ||||||| |||| ||| ||||||||||||| ||| || |
|
|
| T |
4572516 |
atgctgtgttaatcccatatccagttcaaggccatatcaatccattgttgcaactagcaaaatttcttcaccttagaggttttcacataacctatgtaaa |
4572417 |
T |
|
| Q |
102 |
caccgaatacaatcagaaacgcttgctcgaatcaagagatcctaattcttttgatggtttcaatgactttaactttgagaccataccagatggtctaact |
201 |
Q |
| |
|
||| ||||||||||| ||||| |||||| | ||||||| || ||| | ||||||||||||| | ||||||||||||| || ||||||||| || || |
|
|
| T |
4572416 |
cactgaatacaatcacaaacggttgctcaagtcaagaggtcaaaatgcctttgatggtttcaccaattttaactttgagagtattccagatggtttatct |
4572317 |
T |
|
| Q |
202 |
ccaatggaaggcaatggtgatgttactcaagacatataccctctt |
246 |
Q |
| |
|
|||| ||| ||| |||| ||||||| ||||||||| ||| ||||| |
|
|
| T |
4572316 |
ccaacggatggcgatggcgatgttagtcaagacatttacgctctt |
4572272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #26
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 21 - 233
Target Start/End: Complemental strand, 4569601 - 4569393
Alignment:
| Q |
21 |
tccatttcaaggtcatatcaatgcattgttcaaactaggaaagcttcttcatcttaaaggctttcacataacctttgtgaacaccgaatacaatcagaaa |
120 |
Q |
| |
|
|||| ||||||| ||||||||| |||| || ||||||| ||| |||||||| |||| ||||||||||||||||||||| |||||||| ||||| ||| |
|
|
| T |
4569601 |
tccacttcaaggccatatcaatccattattgaaactagcaaaacttcttcaccttagaggctttcacataacctttgtcaacaccga----aatcacaaa |
4569506 |
T |
|
| Q |
121 |
cgcttgctcgaatcaagagatcctaattcttttgatggtttcaatgactttaactttgagaccataccagatggtctaactccaatggaaggcaatggtg |
220 |
Q |
| |
|
| |||||| ||||||||| ||| || | ||||||||||||| ||| |||| ||||||||| || ||||||||| ||||||| | ||||| |||||| |
|
|
| T |
4569505 |
catttgctcaaatcaagaggtccaaaagcctttgatggtttcactgattttacctttgagactattccagatggtttaactccgacagaaggttatggtg |
4569406 |
T |
|
| Q |
221 |
atgttactcaaga |
233 |
Q |
| |
|
|| ||| |||||| |
|
|
| T |
4569405 |
atattagtcaaga |
4569393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #27
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 100 - 290
Target Start/End: Original strand, 4298174 - 4298364
Alignment:
| Q |
100 |
aacaccgaatacaatcagaaacgcttgctcgaatcaagagatcctaattcttttgatggtttcaatgactttaactttgagaccataccagatggtctaa |
199 |
Q |
| |
|
||||||||||||||||| |||| | ||||||||||||| | ||| || ||||||||||||||| |||||| ||||||||| || ||||||||||| | |
|
|
| T |
4298174 |
aacaccgaatacaatcacaaacacctgctcgaatcaaggggtccaaaagcttttgatggtttcaccaactttagctttgagactattccagatggtctga |
4298273 |
T |
|
| Q |
200 |
ctccaatggaaggcaatggtgatgttactcaagacatataccctcttgtgcaatcaatcatgacgaacttccttcagcccttcgatgaact |
290 |
Q |
| |
|
|||||| |||||| |||| |||||||||||||||||| ||||| |||||||||| | |||||||||||||||||| | |||||| |
|
|
| T |
4298274 |
ctccaacggaaggtgatggagatgttactcaagacataccatctctttcccaatcaatcagaaagaacttccttcagccctttggtgaact |
4298364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #28
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 2 - 160
Target Start/End: Original strand, 4255399 - 4255545
Alignment:
| Q |
2 |
atgctgtgttgattccagctccatttcaaggtcatatcaatgcattgttcaaactaggaaagcttcttcatcttaaaggctttcacataacctttgtgaa |
101 |
Q |
| |
|
||||||||||||||||| |||| ||||||| ||||||||| ||| |||||||||| ||| | |||||||||||||||||| || || |
|
|
| T |
4255399 |
atgctgtgttgattccatatccagttcaaggccatatcaatctattattcaaactagcaaaattacttcatcttaaaggcttt------------gtcaa |
4255486 |
T |
|
| Q |
102 |
caccgaatacaatcagaaacgcttgctcgaatcaagagatcctaattcttttgatggtt |
160 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||| ||| || | |||||||||| |
|
|
| T |
4255487 |
caccgaatacaatcacaaacgcttgctcgaatcaagaggtccaaaagcctttgatggtt |
4255545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 121; Significance: 5e-62; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 2 - 234
Target Start/End: Complemental strand, 3088295 - 3088063
Alignment:
| Q |
2 |
atgctgtgttgattccagctccatttcaaggtcatatcaatgcattgttcaaactaggaaagcttcttcatcttaaaggctttcacataacctttgtgaa |
101 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||||| ||| ||||||| ||||||| ||| |||||||| |||||||||||||||||||||||||| || |
|
|
| T |
3088295 |
atgctgtgttgattccatatccacttcaaggtcatataaatccattgttaaaactagcaaaacttcttcaccttaaaggctttcacataacctttgtcaa |
3088196 |
T |
|
| Q |
102 |
caccgaatacaatcagaaacgcttgctcgaatcaagagatcctaattcttttgatggtttcaatgactttaactttgagaccataccagatggtctaact |
201 |
Q |
| |
|
|||||||||||||| || || ||||| ||||||||| | |||||||| |||||||||||| ||| ||| ||||||||| || | ||||||||||||| |
|
|
| T |
3088195 |
taccgaatacaatcacaaccgtttgcttaaatcaagaggttctaattctcttgatggtttcactgattttgtctttgagactatccaagatggtctaact |
3088096 |
T |
|
| Q |
202 |
ccaatggaaggcaatggtgatgttactcaagac |
234 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||| |
|
|
| T |
3088095 |
ccaatggaaggtaatggtgatgttagtcaagac |
3088063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0475 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: scaffold0475
Description:
Target: scaffold0475; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 2 - 211
Target Start/End: Complemental strand, 2374 - 2165
Alignment:
| Q |
2 |
atgctgtgttgattccagctccatttcaaggtcatatcaatgcattgttcaaactaggaaagcttcttcatcttaaaggctttcacataacctttgtgaa |
101 |
Q |
| |
|
||||||||||||||||| |||| ||||||| ||||||||| |||| |||||||||| |||||||||||| |||| ||||||||||||||||||||| || |
|
|
| T |
2374 |
atgctgtgttgattccatatccagttcaaggccatatcaatccattattcaaactagcaaagcttcttcaccttagaggctttcacataacctttgtcaa |
2275 |
T |
|
| Q |
102 |
caccgaatacaatcagaaacgcttgctcgaatcaagagatcctaattcttttgatggtttcaatgactttaactttgagaccataccagatggtctaact |
201 |
Q |
| |
|
||| ||||||||||| |||||||||||| ||||||||| ||||||| || ||||||||||| ||| ||| ||| ||||| || || |||||| ||||| |
|
|
| T |
2274 |
cactgaatacaatcataaacgcttgctcaaatcaagaggtcctaatgctcttgatggtttcgctgatttttgcttcgagactattcccgatggtttaact |
2175 |
T |
|
| Q |
202 |
ccaatggaag |
211 |
Q |
| |
|
||| |||||| |
|
|
| T |
2174 |
ccagtggaag |
2165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 6 - 211
Target Start/End: Original strand, 2033 - 2238
Alignment:
| Q |
6 |
tgtgttgattccagctccatttcaaggtcatatcaatgcattgttcaaactaggaaagcttcttcatcttaaaggctttcacataacctttgtgaacacc |
105 |
Q |
| |
|
|||| |||||||| |||| ||||||| ||||||||| ||||||||||||||| |||||||||||| |||| ||||||||||||||||||||| ||||| |
|
|
| T |
2033 |
tgtgatgattccatatccagttcaaggccatatcaatccattgttcaaactagcaaagcttcttcaccttagaggctttcacataacctttgtcaacact |
2132 |
T |
|
| Q |
106 |
gaatacaatcagaaacgcttgctcgaatcaagagatcctaattcttttgatggtttcaatgactttaactttgagaccataccagatggtctaactccaa |
205 |
Q |
| |
|
||||||||||| |||||||||||| ||||||||| ||||||| || ||||||||||| ||| ||| ||| ||||| || || |||||| |||||||| |
|
|
| T |
2133 |
gaatacaatcataaacgcttgctcaaatcaagaggtcctaatgctcttgatggtttcgctgatttttgcttcgagactattcccgatggtttaactccag |
2232 |
T |
|
| Q |
206 |
tggaag |
211 |
Q |
| |
|
|||||| |
|
|
| T |
2233 |
tggaag |
2238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 2 - 231
Target Start/End: Complemental strand, 1282983 - 1282754
Alignment:
| Q |
2 |
atgctgtgttgattccagctccatttcaaggtcatatcaatgcattgttcaaactaggaaagcttcttcatcttaaaggctttcacataacctttgtgaa |
101 |
Q |
| |
|
||||||||||||||||| |||| |||||| ||||||||| ||||||||||||||| ||| || ||||| |||| ||||||| ||||||||||||| || |
|
|
| T |
1282983 |
atgctgtgttgattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaactacttcaccttagaggcttttacataacctttgttaa |
1282884 |
T |
|
| Q |
102 |
caccgaatacaatcagaaacgcttgctcgaatcaagagatcctaattcttttgatggtttcaatgactttaactttgagaccataccagatggtctaact |
201 |
Q |
| |
|
|| ||||||||||| |||||||||||| ||||||||| ||| ||| | | |||||||||| ||| |||| |||||| ||||| |||||||||||||| |
|
|
| T |
1282883 |
tactgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgccctagatggtttcactgattttagctttgaaaccatcccagatggtctaaca |
1282784 |
T |
|
| Q |
202 |
ccaatggaaggcaatggtgatgttactcaa |
231 |
Q |
| |
|
|| | ||||| |||||||||||| |||| |
|
|
| T |
1282783 |
tcactagaaggtgatggtgatgttagtcaa |
1282754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0199 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0199
Description:
Target: scaffold0199; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 2 - 231
Target Start/End: Complemental strand, 1308 - 1079
Alignment:
| Q |
2 |
atgctgtgttgattccagctccatttcaaggtcatatcaatgcattgttcaaactaggaaagcttcttcatcttaaaggctttcacataacctttgtgaa |
101 |
Q |
| |
|
|||||||||| |||||| |||| |||||| ||||||||| ||||||||||||||| ||| ||| |||| |||| ||||| ||| |||||| ||| || |
|
|
| T |
1308 |
atgctgtgttcattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaacttattcaccttagaggctctcatgtaacctatgtcaa |
1209 |
T |
|
| Q |
102 |
caccgaatacaatcagaaacgcttgctcgaatcaagagatcctaattcttttgatggtttcaatgactttaactttgagaccataccagatggtctaact |
201 |
Q |
| |
|
||| ||||||||||| ||||| |||||| ||||||||| ||| | | | || |||||||||| ||| |||| |||||| ||||| |||||||||||||| |
|
|
| T |
1208 |
cactgaatacaatcacaaacgtttgctcaaatcaagaggtccaactgccttggatggtttcactgattttagctttgaaaccatcccagatggtctaaca |
1109 |
T |
|
| Q |
202 |
ccaatggaaggcaatggtgatgttactcaa |
231 |
Q |
| |
|
||| | ||||| |||||||||||| |||| |
|
|
| T |
1108 |
ccactagaaggtgatggtgatgttagtcaa |
1079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 2 - 231
Target Start/End: Complemental strand, 1676071 - 1675842
Alignment:
| Q |
2 |
atgctgtgttgattccagctccatttcaaggtcatatcaatgcattgttcaaactaggaaagcttcttcatcttaaaggctttcacataacctttgtgaa |
101 |
Q |
| |
|
|||||||||| |||||| |||| |||||| ||||||||| ||||||||||||||| ||| ||| |||| |||| ||||| ||| |||||| ||| || |
|
|
| T |
1676071 |
atgctgtgttcattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaacttattcaccttagaggctctcatgtaacctatgtcaa |
1675972 |
T |
|
| Q |
102 |
caccgaatacaatcagaaacgcttgctcgaatcaagagatcctaattcttttgatggtttcaatgactttaactttgagaccataccagatggtctaact |
201 |
Q |
| |
|
||| ||||||||||| ||||| |||||| ||||||||| ||| | | | || |||||||||| ||| |||| |||||| ||||| |||||||||||||| |
|
|
| T |
1675971 |
cactgaatacaatcacaaacgtttgctcaaatcaagaggtccaactgccttggatggtttcactgattttagctttgaaaccatcccagatggtctaaca |
1675872 |
T |
|
| Q |
202 |
ccaatggaaggcaatggtgatgttactcaa |
231 |
Q |
| |
|
||| | ||||| |||||||||||| |||| |
|
|
| T |
1675871 |
ccactagaaggtgatggtgatgttagtcaa |
1675842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 21 - 195
Target Start/End: Original strand, 20862407 - 20862581
Alignment:
| Q |
21 |
tccatttcaaggtcatatcaatgcattgttcaaactaggaaagcttcttcatcttaaaggctttcacataacctttgtgaacaccgaatacaatcagaaa |
120 |
Q |
| |
|
|||| ||||||||||||||||| || |||| ||||||| ||| || ||||| |||| ||||||| ||||||| ||||| || || ||||||||||| ||| |
|
|
| T |
20862407 |
tccacttcaaggtcatatcaatccaatgttaaaactagcaaaactacttcaccttagaggcttttacataacatttgtcaatactgaatacaatcacaaa |
20862506 |
T |
|
| Q |
121 |
cgcttgctcgaatcaagagatcctaattcttttgatggtttcaatgactttaactttgagaccataccagatggt |
195 |
Q |
| |
|
|||||||| | |||| | ||| | | ||||||||||||| ||||||| |||||||||| | ||||||||| |
|
|
| T |
20862507 |
cgcttgcttaagtcaatgggtccaataccctttgatggtttcactgactttcgctttgagaccgttccagatggt |
20862581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0477 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 215 - 290
Target Start/End: Original strand, 3313 - 3388
Alignment:
| Q |
215 |
atggtgatgttactcaagacatataccctcttgtgcaatcaatcatgacgaacttccttcagcccttcgatgaact |
290 |
Q |
| |
|
||||||||||||||||||||||| | ||||||| ||||| || | ||||| ||| ||||||||||| ||||||| |
|
|
| T |
3313 |
atggtgatgttactcaagacataccctctcttgttcaatctataagaacgaatttctttcagcccttcaatgaact |
3388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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