View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4834_high_2 (Length: 429)
Name: NF4834_high_2
Description: NF4834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4834_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 28 - 257
Target Start/End: Complemental strand, 34899975 - 34899746
Alignment:
| Q |
28 |
atctcaacttgaaagttgaaactaccaaactttacctatatgcatataaacacatctctctttagttcttctctcgctatttgatgtcaacaaaagctaa |
127 |
Q |
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| T |
34899975 |
atctcaacttgaaagttgaaactaccaaactttacctatatgcatataaacacatctctctttagttcttctctcgctatttgatgtcaacaaaagctaa |
34899876 |
T |
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| Q |
128 |
attgtgtcttcccctgcgtgtatgcaaccttatagtctcaaaattttccttccattctcaccaaacatgaaaggtatgtatcttccaactacaaaatttt |
227 |
Q |
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| T |
34899875 |
attgtgtcttcccctgcgtgtatgcaaccttatagtctcaaaattttccttccattctcaccaaacatgaaaggtatgtatcttccaactacaaaatttt |
34899776 |
T |
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| Q |
228 |
atgtgaatttgtgcagatgatatcactgac |
257 |
Q |
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| T |
34899775 |
atgtgaatttgtgcagatgatatcactgac |
34899746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 116; Significance: 7e-59; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 312 - 427
Target Start/End: Original strand, 16211429 - 16211544
Alignment:
| Q |
312 |
cagtgtgtaaagccgttggaagtggtgctaaacttataggcacgaattgtgacttctacaacttatgcacatgtacttacgatcatgaaccatatgatat |
411 |
Q |
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| T |
16211429 |
cagtgtgtaaagccgttggaagtggtgctaaacttataggcacgaattgtgacttctacaacttatgcacatgtacttacgatcatgaaccatatgatat |
16211528 |
T |
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| Q |
412 |
tgctctatgcgatatt |
427 |
Q |
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| T |
16211529 |
tgctctatgcgatatt |
16211544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 312 - 427
Target Start/End: Original strand, 16220641 - 16220756
Alignment:
| Q |
312 |
cagtgtgtaaagccgttggaagtggtgctaaacttataggcacgaattgtgacttctacaacttatgcacatgtacttacgatcatgaaccatatgatat |
411 |
Q |
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| T |
16220641 |
cagtgtgtaaagtcgttggaagtggtgctaaacttataggcacgaattgtgacttctacaacttatgcacctgtacttacgatcatcaaccatatgatat |
16220740 |
T |
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| Q |
412 |
tgctctatgcgatatt |
427 |
Q |
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| T |
16220741 |
tgatctatgcgatatt |
16220756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 312 - 427
Target Start/End: Original strand, 16215655 - 16215770
Alignment:
| Q |
312 |
cagtgtgtaaagccgttggaagtggtgctaaacttataggcacgaattgtgacttctacaacttatgcacatgtacttacgatcatgaaccatatgatat |
411 |
Q |
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| T |
16215655 |
cagtgtgtaaagcctttggaaaaggtgttaaacttataggcacgaattgtgacttctacaatttatgcacttgtacttacgatcatctaccatataattt |
16215754 |
T |
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| Q |
412 |
tgctctatgcgatatt |
427 |
Q |
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| T |
16215755 |
tgatctatgcgatatt |
16215770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 314 - 390
Target Start/End: Original strand, 16207245 - 16207321
Alignment:
| Q |
314 |
gtgtgtaaagccgttggaagtggtgctaaacttataggcacgaattgtgacttctacaacttatgcacatgtactta |
390 |
Q |
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| T |
16207245 |
gtgtgtcaagactttggaaaaggtgctaaacctataagcacgaattgtgacttctacaacttatgcacatgttctta |
16207321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 321 - 392
Target Start/End: Original strand, 16226027 - 16226098
Alignment:
| Q |
321 |
aagccgttggaagtggtgctaaacttataggcacgaattgtgacttctacaacttatgcacatgtacttacg |
392 |
Q |
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| T |
16226027 |
aagcctttggaagaggtgttaaacctataggatcgagttgtgacttctacaacttatgcacatgtacttacg |
16226098 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 321 - 393
Target Start/End: Original strand, 16180949 - 16181021
Alignment:
| Q |
321 |
aagccgttggaagtggtgctaaacttataggcacgaattgtgacttctacaacttatgcacatgtacttacga |
393 |
Q |
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| T |
16180949 |
aagcctttggaagaggtgttaaacctataggatggagttgtgacttctacaacttatgcacatgtacttacga |
16181021 |
T |
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