View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4834_high_3 (Length: 401)
Name: NF4834_high_3
Description: NF4834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4834_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 392
Target Start/End: Complemental strand, 14752624 - 14752233
Alignment:
| Q |
1 |
ctaactccatttacttccctctggtgtgtctcagtgtcatgtccctcggcgccatcatcaccaccaccaatcccctcaacacagtacatgaaatcgcgaa |
100 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14752624 |
ctaactccatttacttccctgtggtgtgtctcagtgtcatgtccctcggcgccatcatcaccaccaccaatcccctcaacacagtacatgaaatcgcgaa |
14752525 |
T |
|
| Q |
101 |
gcagatcgcggattccaaacctgtcctcgcctttacaacctcgcccctcatttccaaaatcaatgcagcatctccaactcttccaattattcttatggaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
14752524 |
gcagatcgcggattccaaacctgtcctcgcctttacaacctcgcccctcgtttccaaaatcaatgcagcatcgccaactcttccaattattcttatggaa |
14752425 |
T |
|
| Q |
201 |
gccgatgggaactcgacatcatcaaacacactggaggaaatgatgaagaaagaaggtcaatcctatgatgacacgtggactaaaagttctggaccggcca |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14752424 |
gccgatgggaactcgacatcatcaaacacactggaggaaatgatgaagaaagaaggtcaatcctatgatgacacgtggactaaaagttctggaccggcca |
14752325 |
T |
|
| Q |
301 |
gaagaccaatgagagagcaagtcaaccaagatgacacagctactctactttactcatctggaacaacaggacctagcaaaggagtattatct |
392 |
Q |
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||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||| |
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| T |
14752324 |
gaagaccaaagagagagcaagtcaaccaagacgacacagctactctactctactcatctggaacaacaggaccaagcaaaggagtagtatct |
14752233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 321 - 398
Target Start/End: Complemental strand, 8534651 - 8534574
Alignment:
| Q |
321 |
gtcaaccaagatgacacagctactctactttactcatctggaacaacaggacctagcaaaggagtattatctacccac |
398 |
Q |
| |
|
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| T |
8534651 |
gtcaaccagaatgacacagccacattactctactcatcaggaacaacaggaccaagcaaaggagtagtatcttcccac |
8534574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 124
Target Start/End: Complemental strand, 8534951 - 8534830
Alignment:
| Q |
3 |
aactccatttacttccctctggtgtgtctcagtgtcatgtccctcggcgccatcatcaccaccaccaatcccctcaacacagtacatgaaatcgcgaagc |
102 |
Q |
| |
|
|||||||| || |||||| | || |||||| ||||||||||||||||| |||||||||||||||||||| ||||| ||| |||||| || || | |
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| T |
8534951 |
aactccatctatttccctgttgtctgtctctccgtcatgtccctcggcgctatcatcaccaccaccaatcctctcaatacatctggtgaaattgctaaac |
8534852 |
T |
|
| Q |
103 |
agatcgcggattccaaacctgt |
124 |
Q |
| |
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|||| || |||||||||||||| |
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| T |
8534851 |
agattgctgattccaaacctgt |
8534830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 124
Target Start/End: Original strand, 8547997 - 8548118
Alignment:
| Q |
3 |
aactccatttacttccctctggtgtgtctcagtgtcatgtccctcggcgccatcatcaccaccaccaatcccctcaacacagtacatgaaatcgcgaagc |
102 |
Q |
| |
|
|||||||| || |||||| | || |||||| ||||||||||||||||| |||||||||||||||||||| ||||| ||| |||||| || || | |
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| T |
8547997 |
aactccatctatttccctgttgtctgtctctccgtcatgtccctcggcgctatcatcaccaccaccaatcctctcaatacatctggtgaaattgctaaac |
8548096 |
T |
|
| Q |
103 |
agatcgcggattccaaacctgt |
124 |
Q |
| |
|
|||| || |||||||||||||| |
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| T |
8548097 |
agattgctgattccaaacctgt |
8548118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 321 - 398
Target Start/End: Complemental strand, 8599890 - 8599813
Alignment:
| Q |
321 |
gtcaaccaagatgacacagctactctactttactcatctggaacaacaggacctagcaaaggagtattatctacccac |
398 |
Q |
| |
|
|||||||| |||||||||| || |||| |||||||| |||||||||||||| |||||||||||| ||||| ||||| |
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| T |
8599890 |
gtcaaccagaatgacacagccacattactctactcatcaggaacaacaggaccaagcaaaggagtagtatcttcccac |
8599813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 124
Target Start/End: Complemental strand, 8600190 - 8600069
Alignment:
| Q |
3 |
aactccatttacttccctctggtgtgtctcagtgtcatgtccctcggcgccatcatcaccaccaccaatcccctcaacacagtacatgaaatcgcgaagc |
102 |
Q |
| |
|
|||||||| || |||||| | || |||||| ||||||||||||||||| |||||||||||||||||||| ||||| ||| |||||| || || | |
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| T |
8600190 |
aactccatctatttccctgttgtctgtctctccgtcatgtccctcggcgctatcatcaccaccaccaatcctctcaatacatctggtgaaattgctaaac |
8600091 |
T |
|
| Q |
103 |
agatcgcggattccaaacctgt |
124 |
Q |
| |
|
|||| || |||||||||||||| |
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| T |
8600090 |
agattgctgattccaaacctgt |
8600069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 124
Target Start/End: Original strand, 8613236 - 8613357
Alignment:
| Q |
3 |
aactccatttacttccctctggtgtgtctcagtgtcatgtccctcggcgccatcatcaccaccaccaatcccctcaacacagtacatgaaatcgcgaagc |
102 |
Q |
| |
|
|||||||| || |||||| | || |||||| ||||||||||||||||| |||||||||||||||||||| ||||| ||| |||||| || || | |
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| T |
8613236 |
aactccatctatttccctgttgtctgtctctccgtcatgtccctcggcgctatcatcaccaccaccaatcctctcaatacatctggtgaaattgctaaac |
8613335 |
T |
|
| Q |
103 |
agatcgcggattccaaacctgt |
124 |
Q |
| |
|
|||| || |||||||||||||| |
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| T |
8613336 |
agattgctgattccaaacctgt |
8613357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 321 - 398
Target Start/End: Original strand, 8613536 - 8613613
Alignment:
| Q |
321 |
gtcaaccaagatgacacagctactctactttactcatctggaacaacaggacctagcaaaggagtattatctacccac |
398 |
Q |
| |
|
|||||||| |||||||||| || |||| |||||||| |||||||||||||| |||||||||||| ||||| ||||| |
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| T |
8613536 |
gtcaaccagaatgacacagccacattactctactcatcaggaacaacaggaccaagcaaaggagtagtatcttcccac |
8613613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 251 - 286
Target Start/End: Complemental strand, 53619095 - 53619060
Alignment:
| Q |
251 |
agaaggtcaatcctatgatgacacgtggactaaaag |
286 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| |
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| T |
53619095 |
agaaggtcaatactatgatgacacgtggactaaaag |
53619060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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