View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4834_high_4 (Length: 378)
Name: NF4834_high_4
Description: NF4834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4834_high_4 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 378
Target Start/End: Complemental strand, 30287216 - 30286860
Alignment:
| Q |
1 |
agctctactcggaaaattagagtatcaaagaggtaatgtggaaggtgctcttcgtgtatttgatgggattgatcttaaagcagctatacagcgactgcaa |
100 |
Q |
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| T |
30287216 |
agctctactcggaaaattagagtatcaaagaggtaatgtggaaggtgctcttcgtgtatttgatgggattgatcttaaagcagctatacagcgactgcaa |
30287117 |
T |
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| Q |
101 |
ccttctcttttggaaaagccacccgtcaagaaaggtccctctcgtgccgaatcaccttcttcagtaactcagcatgctgctagtatggtgcttgaagcca |
200 |
Q |
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| T |
30287116 |
ccttcttttttggaaaagccacccgtcaaaaaaggtccctctcgtgccgaatcaccttcttcagtaactcagcatgctgctagtatggtgcttgaagcca |
30287017 |
T |
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| Q |
201 |
tctacctaaaagccaagtctctacaaaaactggggaaatttgatggtattgaattattaactagtgaaagttattctctactagtagttaaccttttcta |
300 |
Q |
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| T |
30287016 |
tctacctaaaagccaagtctctacaaaaactggggaaatttgatggtattgaattattaac--------------------tagtagttaaccttttcta |
30286937 |
T |
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| Q |
301 |
attttttggaatggaaattgatttcctgtatacctacatgaatgcatctataacaccaaactcgactttctggcagta |
378 |
Q |
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| T |
30286936 |
attttttggaatggaaattgatttcctgtatacctacatgaatgcatctataatacgaatc-cgaatttctggcagta |
30286860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 20 - 252
Target Start/End: Complemental strand, 11071535 - 11071303
Alignment:
| Q |
20 |
gagtatcaaagaggtaatgtggaaggtgctcttcgtgtatttgatgggattgatcttaaagcagctatacagcgactgcaaccttctcttttggaaaagc |
119 |
Q |
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| T |
11071535 |
gagtatcagagaggtaatgtagaaggtgctcttcgtgtctttgatgggatcgatctccatgctgccatccaacggttgcaaccctcgttttctgaaaaat |
11071436 |
T |
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| Q |
120 |
cacccgtcaagaaaggtccctctcgtgccgaatcaccttcttcagtaactcagcatgctgctagtatggtgcttgaagccatctacctaaaagccaagtc |
219 |
Q |
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| T |
11071435 |
cgcctgtcaaaaaaggtcgtactcgcacagaatcaccttcttcagtctctcagcatgctgctactttggtgcttgaagctatctacttaaaagccaagtc |
11071336 |
T |
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| Q |
220 |
tctacaaaaactggggaaatttgatggtattga |
252 |
Q |
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| T |
11071335 |
ccaacaaaaactggggaaatttgctggtattga |
11071303 |
T |
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