View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4834_high_5 (Length: 356)
Name: NF4834_high_5
Description: NF4834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4834_high_5 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 8 - 356
Target Start/End: Original strand, 12439078 - 12439426
Alignment:
| Q |
8 |
tttggtgttgcattgttgataatcttttcaagaatctcatctccagttttatggattttcctcaatttaacaatcattccactaataacatgtagccaat |
107 |
Q |
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| T |
12439078 |
tttgttgttgcattgttgataatcttttcaagaatctcatctccagttttatggattttcctcaatttaacaatcattccactaataacatgtagccaat |
12439177 |
T |
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| Q |
108 |
gctgtgagggaaacagattagtgaaactaaaactctcagccatctttgcagtttccttgatgaatgtggtaaatgcttcttgctccttgcatttatcacc |
207 |
Q |
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| T |
12439178 |
gctgtgagggaaacagattagtgaaactaaaactctcagccatctttgcagtttccttgatgaatgtggtaaatgcttcttgctccttgcatttatcacc |
12439277 |
T |
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| Q |
208 |
aaaagctgctcttgaaataatgttatatgacaaagataaaatttcatgactgaggttgattttagatccagtgtttgaagaaatatttttaataaaattt |
307 |
Q |
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| T |
12439278 |
aaaagctgctcttgaaataatgttatatgacaaagataaaatttcatgactgaggttgattttagatccagtgtttgaagaaatatttttaataaaattt |
12439377 |
T |
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| Q |
308 |
gacacctcttccttcctaattgattcgaatgatctcacacggttcgtac |
356 |
Q |
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| T |
12439378 |
gacacctcttccttcctaattgattggaatgatctcacacggttcgtac |
12439426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 131; Significance: 7e-68; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 22 - 348
Target Start/End: Complemental strand, 2432394 - 2432068
Alignment:
| Q |
22 |
gttgataatcttttcaagaatctcatctccagttttatggattttcctcaatttaacaatcattccactaataacatgtagccaatgctgtgagggaaac |
121 |
Q |
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| T |
2432394 |
gttgatgatattttcaagaatcatatcaccagtcttgtgaattttcttcaatttacaaaccattccactaatcacatgtaaccaatgttgggagggaaac |
2432295 |
T |
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| Q |
122 |
agattagtgaaactaaaactctcagccatctttgcagtttccttgatgaatgtggtaaatgcttcttgctccttgcatttatcaccaaaagctgctcttg |
221 |
Q |
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| T |
2432294 |
aaattagtgacactgaaactctctgccaactttatagtttccttgatgaacttggtatatgcttcttgctccttgcatttatcaccaaaagttgccctag |
2432195 |
T |
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| Q |
222 |
aaataatgttatatgacaaagataaaatttcatgactgaggttgattttagatccagtgtttgaagaaatatttttaataaaatttgacacctcttcctt |
321 |
Q |
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| T |
2432194 |
aaatgatgttatattgcatagataaaatttcatgagtgaggttgataatagttccagtgtttatagaaatacatcttgttaaatttaacacctcttcctc |
2432095 |
T |
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| Q |
322 |
cctaattgattcgaatgatctcacacg |
348 |
Q |
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| T |
2432094 |
tctaattgattggaatgatctcacacg |
2432068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 82; Significance: 1e-38; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 15 - 340
Target Start/End: Original strand, 41623425 - 41623750
Alignment:
| Q |
15 |
ttgcattgttgataatcttttcaagaatctcatctccagttttatggattttcctcaatttaacaatcattccactaataacatgtagccaatgctgtga |
114 |
Q |
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| T |
41623425 |
ttgctttgttgatgatcttctcaagaaccatatcaccacttctatgcattgtcttcaatttatgtaccattccactaatcacatgtagccaatgttgaga |
41623524 |
T |
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| Q |
115 |
gggaaacagattagtgaaactaaaactctcagccatctttgcagtttccttgatgaatgtggtaaatgcttcttgctccttgcatttatcaccaaaagct |
214 |
Q |
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| T |
41623525 |
gggaaacaaattagggatattgacactctcaaccacccttgtacattccttgatgaacaagataaatgcttcttgatcattgcatttatcaccaaaagtt |
41623624 |
T |
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| Q |
215 |
gctcttgaaataatgttatatgacaaagataaaatttcatgactgaggttgattttagatccagtgtttgaagaaatatttttaataaaatttgacacct |
314 |
Q |
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| T |
41623625 |
gcccttgaaatgatgttatatgtcatagatgatatttcatctgtaaggttgatagtagatccagtgtttatagaaatatatctaattaattttgacaact |
41623724 |
T |
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| Q |
315 |
cttccttcctaattgattcgaatgat |
340 |
Q |
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| T |
41623725 |
cttcctctcgaattgattggaatgat |
41623750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 82 - 348
Target Start/End: Complemental strand, 41653516 - 41653250
Alignment:
| Q |
82 |
cattccactaataacatgtagccaatgctgtgagggaaacagattagtgaa-actaaaactctcagccatctttgcagtttccttgatgaatgtggtaaa |
180 |
Q |
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|||||||||||| ||||||||||||||||| |||||||||| |||| |||| ||| ||||||||||||| || |||||| ||||| | || | |
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| T |
41653516 |
cattccactaatcacatgtagccaatgctgggagggaaacaaatta-tgaatactgaaactctcagccacagacatagattccttcatgaacaagatata |
41653418 |
T |
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| Q |
181 |
tgcttcttgctccttgcatttatcaccaaaagctgctcttgaaataatgttatatgacaaagataaaatttcatgactgaggttgattttagatccagtg |
280 |
Q |
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| T |
41653417 |
tgcttcattgtccttacaattatcaccaaaagatgcccttgaagtgatgctatatgtcaaagataaaatttcatctgtaaggttgatggtagatccagtg |
41653318 |
T |
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| Q |
281 |
tttgaagaaatatttttaataaaatttgacacctcttccttcctaattgattcgaatgatctcacacg |
348 |
Q |
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| T |
41653317 |
ttaatagaaatatatctaattaatttcgacacctcttcctctcgaattgattggtatgatctcacacg |
41653250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 180 - 348
Target Start/End: Complemental strand, 41646216 - 41646048
Alignment:
| Q |
180 |
atgcttcttgctccttgcatttatcaccaaaagctgctcttgaaataatgttatatgacaaagataaaatttcatgactgaggttgattttagatccagt |
279 |
Q |
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||||||||| ||||| || ||||||||||||| ||| |||||| |||||||||| || || ||||||||||| ||| ||||||| |||| || | |
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| T |
41646216 |
atgcttctttgtccttacaattatcaccaaaagatgcccttgaagcgatgttatatgtcatagctaaaatttcatctgtgaagttgattgtagacccctt |
41646117 |
T |
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| Q |
280 |
gtttgaagaaatatttttaataaaatttgacacctcttccttcctaattgattcgaatgatctcacacg |
348 |
Q |
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|||| ||||| || | |||| || ||||| |||||||||| | |||||||| ||||||||||||||| |
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| T |
41646116 |
gtttatagaaagatatctaattaattttgatacctcttcctctcgaattgattggaatgatctcacacg |
41646048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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