View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4834_high_6 (Length: 340)
Name: NF4834_high_6
Description: NF4834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4834_high_6 |
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| [»] chr5 (3 HSPs) |
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| [»] chr8 (3 HSPs) |
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| [»] scaffold0209 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 262; Significance: 1e-146; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 11 - 340
Target Start/End: Original strand, 4376861 - 4377186
Alignment:
| Q |
11 |
cagagacaaagatagccaaaattttagtcaattgggctgccaatatgtaacaagnnnnnnnnnnnnntttgtccaaagctatgacatctagtagtgttag |
110 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
4376861 |
cagagacaaagatagccaaaattttagtcaattgagctgccaatatgtaacaagaaaaaaata----tttgtccaaagctatgacatctagtagtgttag |
4376956 |
T |
|
| Q |
111 |
gcaacaaaaccaatccctggcctatatgtaatcctattcatgttaaatgtaagcactcaaatacaaagtcaacactaaaatcaaacgctactgaaagatt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||||| |
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| T |
4376957 |
gcaacaaaaccaatccctggcctatatgtaatcctattcacgttaaatgtaagcactcaaacacagagtcaacactaaaatcaaatgctactgaaagatt |
4377056 |
T |
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| Q |
211 |
tcaaagatatgtgctattttaatccatttaacataaatgcagccactgtcaaccaaatatatatcgaccaaattaaatgcatcatgctagtatttgattc |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4377057 |
tcaaagatatgtgctattttaatccatttaacataaatgcagccactgtcaaccaaatatatatcgaccaaattaaatgcatcatgctagtatttgattc |
4377156 |
T |
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| Q |
311 |
taaagtaaatgaaattggcaatgtcgcaac |
340 |
Q |
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|||| ||||||||||||||||||||||||| |
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| T |
4377157 |
taaattaaatgaaattggcaatgtcgcaac |
4377186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 78 - 143
Target Start/End: Complemental strand, 30654654 - 30654589
Alignment:
| Q |
78 |
tttgtccaaagctatgacatctagtagtgttaggcaacaaaaccaatccctggcctatatgtaatc |
143 |
Q |
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| T |
30654654 |
tttgtccaaaggtttgacatcgagtagtgttaggcaacaaaactaatccctgatctatatgtaatc |
30654589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 190
Target Start/End: Complemental strand, 19933864 - 19933828
Alignment:
| Q |
154 |
taaatgtaagcactcaaatacaaagtcaacactaaaa |
190 |
Q |
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| T |
19933864 |
taaatgtaagcactcaaacacaaagccaacactaaaa |
19933828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 211; Significance: 1e-115; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 78 - 340
Target Start/End: Original strand, 8834476 - 8834738
Alignment:
| Q |
78 |
tttgtccaaagctatgacatctagtagtgttaggcaacaaaaccaatccctggcctatatgtaatcctattcatgttaaatgtaagcactcaaatacaaa |
177 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |
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| T |
8834476 |
tttgtccaaagctatgacatctagtagtgttaggcaacaaaattaatccctggcctatatgtaatcctattcatgttaaatgtaagcactcaaacacaga |
8834575 |
T |
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| Q |
178 |
gtcaacactaaaatcaaacgctactgaaagatttcaaagatatgtgctattttaatccatttaacataaatgcagccactgtcaaccaaatatatatcga |
277 |
Q |
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|||||||||||||||||| |||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||| |||||| |||||||||||| |
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| T |
8834576 |
gtcaacactaaaatcaaatgctactgaaagacttcaaagatatgcgctattttaatccatttaacaaaaatgcagccactctcaacctaatatatatcga |
8834675 |
T |
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| Q |
278 |
ccaaattaaatgcatcatgctagtatttgattctaaagtaaatgaaattggcaatgtcgcaac |
340 |
Q |
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| T |
8834676 |
ccaaattaaatgcaacatgctagtatttgattccaaattaaatgaaattggcaatgtcgcaac |
8834738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 177 - 260
Target Start/End: Original strand, 15437538 - 15437620
Alignment:
| Q |
177 |
agtcaacactaaaatcaaacgctactgaaagatttcaaagatatgtgctattttaatccatttaacataaatgcagccactgtc |
260 |
Q |
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||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |
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| T |
15437538 |
agtcaacactaaaatcaaatgctactgaaagatttcaaag-tatgtgctattttaatccatttaacagaaatgcagccactgtc |
15437620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 177 - 260
Target Start/End: Original strand, 15528842 - 15528924
Alignment:
| Q |
177 |
agtcaacactaaaatcaaacgctactgaaagatttcaaagatatgtgctattttaatccatttaacataaatgcagccactgtc |
260 |
Q |
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||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |
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| T |
15528842 |
agtcaacactaaaatcaaatgctactgaaagatttcaaag-tatgtgctattttaatccatttaacagaaatgcagccactgtc |
15528924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0209 (Bit Score: 137; Significance: 2e-71; HSPs: 2)
Name: scaffold0209
Description:
Target: scaffold0209; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 78 - 305
Target Start/End: Complemental strand, 7306 - 7078
Alignment:
| Q |
78 |
tttgtccaaagctatgacatctagtagtgttaggcaacaaaaccaatccctggcctatatgtaatcctattcatgttaaatgtaagcactcaaatacaaa |
177 |
Q |
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||||||||||||| ||||||||| |||||||| ||||||| || ||||||| ||||||||||||| |||||||| |||||||||||||||||| ||| | |
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| T |
7306 |
tttgtccaaagctgtgacatctaatagtgttatgcaacaacactaatccctaacctatatgtaatcttattcatgctaaatgtaagcactcaaacacaga |
7207 |
T |
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| Q |
178 |
gtcaacactaaaatcaaacgctactgaaagatttcaaagatatgtgctattttaatccatttaac-ataaatgcagccactgtcaaccaaatatatatcg |
276 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||| |||| | |||||||||| |
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| T |
7206 |
gtcaacactaaaatcaaatgctactgaaagatttcaaagatatgttctattttaatccatttaacaaaaaatgcagccagtgtctaggtaatatatatca |
7107 |
T |
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| Q |
277 |
accaaattaaatgcatcatgctagtattt |
305 |
Q |
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||||||||||||||| ||||||||||||| |
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| T |
7106 |
accaaattaaatgcaacatgctagtattt |
7078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0209; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 78 - 305
Target Start/End: Complemental strand, 20760 - 20532
Alignment:
| Q |
78 |
tttgtccaaagctatgacatctagtagtgttaggcaacaaaaccaatccctggcctatatgtaatcctattcatgttaaatgtaagcactcaaatacaaa |
177 |
Q |
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||||||||||||| ||||||||| |||||||| ||||||| || ||||||| ||||||||||||| |||||||| |||||||||||||||||| ||| | |
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| T |
20760 |
tttgtccaaagctgtgacatctaatagtgttatgcaacaacactaatccctaacctatatgtaatcttattcatgctaaatgtaagcactcaaacacaga |
20661 |
T |
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| Q |
178 |
gtcaacactaaaatcaaacgctactgaaagatttcaaagatatgtgctattttaatccatttaac-ataaatgcagccactgtcaaccaaatatatatcg |
276 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||| |||| | |||||||||| |
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| T |
20660 |
gtcaacactaaaatcaaatgctactgaaagatttcaaagatatgttctattttaatccatttaacaaaaaatgcagccagtgtctaggtaatatatatca |
20561 |
T |
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| Q |
277 |
accaaattaaatgcatcatgctagtattt |
305 |
Q |
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||||||||||||||| ||||||||||||| |
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| T |
20560 |
accaaattaaatgcaacatgctagtattt |
20532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 177 - 260
Target Start/End: Complemental strand, 30936309 - 30936226
Alignment:
| Q |
177 |
agtcaacactaaaatcaaacgctactgaaagatttcaaagatatgtgctattttaatccatttaacataaatgcagccactgtc |
260 |
Q |
| |
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||||||||||||||||||| |||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||| |
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| T |
30936309 |
agtcaacactaaaatcaaatgctactgaaagacttcaaagatatgttctattttaatccatttaatataaatgcagccactgtc |
30936226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 177 - 260
Target Start/End: Original strand, 22589347 - 22589430
Alignment:
| Q |
177 |
agtcaacactaaaatcaaacgctactgaaagatttcaaagatatgtgctattttaatccatttaacataaatgcagccactgtc |
260 |
Q |
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||||||||||||||||||| |||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||| |
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| T |
22589347 |
agtcaacactaaaatcaaatgctactgaaagacttcaaagatatgttctatttgaatccatttaacataaatgcagccactgtc |
22589430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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