View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4834_high_7 (Length: 331)
Name: NF4834_high_7
Description: NF4834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4834_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 8899570 - 8899252
Alignment:
| Q |
1 |
gaagtgcatgtgtagaggtgcagctgattttcttatcaaacctgttcggaagaatgagcttacgaacttatggcagcatgtctggagaaagcacgttgta |
100 |
Q |
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| T |
8899570 |
gaagtgcatgtgtagaggtgcagctgattttcttatcaaacctgttcggaagaatgagcttacgaacttatggcagcatgtctggagaaagcacgttgta |
8899471 |
T |
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| Q |
101 |
tgtcatatttctgaatcnnnnnnnnnctttatgtatttccttctctgactgtgtcctagaaatttatcatatatgtacttgtgcttgttttaatctctgt |
200 |
Q |
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| T |
8899470 |
tgtcatatttctggatctttttttt-ctttatgtatttccttctctgactgtgtcctagaaatttatcatatatgtacttgtgcttgttttaatctctgt |
8899372 |
T |
|
| Q |
201 |
cgtatgttatttatacagattagcaggcctctccaaaatacaacatccgcacaaagcaaccttaaaattgcgacagaagacaattttccttgcaaccaat |
300 |
Q |
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| T |
8899371 |
cgtatgttatttatacagattagcaggcctctccaaaatacaacatctgcacaaagtaaccttaaaattgcgacagaagacaattttcctcgcagccaat |
8899272 |
T |
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| Q |
301 |
cgactgattctgcttctgtg |
320 |
Q |
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| T |
8899271 |
cgactgattctgcttctgtg |
8899252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 89
Target Start/End: Original strand, 49082703 - 49082766
Alignment:
| Q |
26 |
gattttcttatcaaacctgttcggaagaatgagcttacgaacttatggcagcatgtctggagaa |
89 |
Q |
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| T |
49082703 |
gattttctcattaaaccagttcgcaggaatgagcttaggaacttgtggcagcatgtgtggagaa |
49082766 |
T |
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