View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4834_high_9 (Length: 320)
Name: NF4834_high_9
Description: NF4834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4834_high_9 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 116; Significance: 5e-59; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 3 - 118
Target Start/End: Complemental strand, 16211544 - 16211429
Alignment:
| Q |
3 |
aatatcgcatagagcaatatcatatggttcatgatcgtaagtacatgtgcataagttgtagaagtcacaattcgtgcctataagtttagcaccacttcca |
102 |
Q |
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| T |
16211544 |
aatatcgcatagagcaatatcatatggttcatgatcgtaagtacatgtgcataagttgtagaagtcacaattcgtgcctataagtttagcaccacttcca |
16211445 |
T |
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| Q |
103 |
acggctttacacactg |
118 |
Q |
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| T |
16211444 |
acggctttacacactg |
16211429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 3 - 118
Target Start/End: Complemental strand, 16220756 - 16220641
Alignment:
| Q |
3 |
aatatcgcatagagcaatatcatatggttcatgatcgtaagtacatgtgcataagttgtagaagtcacaattcgtgcctataagtttagcaccacttcca |
102 |
Q |
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| T |
16220756 |
aatatcgcatagatcaatatcatatggttgatgatcgtaagtacaggtgcataagttgtagaagtcacaattcgtgcctataagtttagcaccacttcca |
16220657 |
T |
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| Q |
103 |
acggctttacacactg |
118 |
Q |
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| T |
16220656 |
acgactttacacactg |
16220641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 3 - 118
Target Start/End: Complemental strand, 16215770 - 16215655
Alignment:
| Q |
3 |
aatatcgcatagagcaatatcatatggttcatgatcgtaagtacatgtgcataagttgtagaagtcacaattcgtgcctataagtttagcaccacttcca |
102 |
Q |
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| T |
16215770 |
aatatcgcatagatcaaaattatatggtagatgatcgtaagtacaagtgcataaattgtagaagtcacaattcgtgcctataagtttaacaccttttcca |
16215671 |
T |
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| Q |
103 |
acggctttacacactg |
118 |
Q |
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| T |
16215670 |
aaggctttacacactg |
16215655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 40 - 116
Target Start/End: Complemental strand, 16207321 - 16207245
Alignment:
| Q |
40 |
taagtacatgtgcataagttgtagaagtcacaattcgtgcctataagtttagcaccacttccaacggctttacacac |
116 |
Q |
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| T |
16207321 |
taagaacatgtgcataagttgtagaagtcacaattcgtgcttataggtttagcaccttttccaaagtcttgacacac |
16207245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 38 - 109
Target Start/End: Complemental strand, 16226098 - 16226027
Alignment:
| Q |
38 |
cgtaagtacatgtgcataagttgtagaagtcacaattcgtgcctataagtttagcaccacttccaacggctt |
109 |
Q |
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| T |
16226098 |
cgtaagtacatgtgcataagttgtagaagtcacaactcgatcctataggtttaacacctcttccaaaggctt |
16226027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 37 - 109
Target Start/End: Complemental strand, 16181021 - 16180949
Alignment:
| Q |
37 |
tcgtaagtacatgtgcataagttgtagaagtcacaattcgtgcctataagtttagcaccacttccaacggctt |
109 |
Q |
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| T |
16181021 |
tcgtaagtacatgtgcataagttgtagaagtcacaactccatcctataggtttaacacctcttccaaaggctt |
16180949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 208 - 320
Target Start/End: Original strand, 8899458 - 8899570
Alignment:
| Q |
208 |
cagaaatatgacatacaacgtgctttctccagacatgctgccataagttcgtaagctcattcttccgaacaggtttgataagaaaatcagctgcacctct |
307 |
Q |
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| T |
8899458 |
cagaaatatgacatacaacgtgctttctccagacatgctgccataagttcgtaagctcattcttccgaacaggtttgataagaaaatcagctgcacctct |
8899557 |
T |
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| Q |
308 |
acacatgcacttc |
320 |
Q |
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| T |
8899558 |
acacatgcacttc |
8899570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 232 - 295
Target Start/End: Complemental strand, 49082766 - 49082703
Alignment:
| Q |
232 |
ttctccagacatgctgccataagttcgtaagctcattcttccgaacaggtttgataagaaaatc |
295 |
Q |
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| T |
49082766 |
ttctccacacatgctgccacaagttcctaagctcattcctgcgaactggtttaatgagaaaatc |
49082703 |
T |
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