View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4835-Insertion-1 (Length: 1000)
Name: NF4835-Insertion-1
Description: NF4835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4835-Insertion-1 |
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Alignment Details
Target: chr1 (Bit Score: 604; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 604; E-Value: 0
Query Start/End: Original strand, 8 - 779
Target Start/End: Complemental strand, 39956014 - 39955257
Alignment:
| Q |
8 |
ataggaactgcagagctgtgagatataaaacatgaggtgtttaaagcttggctctttatttctcagtgtatgttacnnnnnnnnagtatattataattgt |
107 |
Q |
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| T |
39956014 |
ataggaactgcagagctgtgagatataaaacatgaggtgtttaaagtttggctctttatttttcagtgtatgttacttttttt-agtatattataattgt |
39955916 |
T |
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| Q |
108 |
atattcttttgatatctctctttatatggctttaaagtggggaatataccatagaagtttgcaatgcagtgacaacttcctatttatttataaagatcgt |
207 |
Q |
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| T |
39955915 |
atattcttttgatatctct--ttatatggctttaaagtggggaatataccatagaagttagcaatgcagtgacaacttcctatttatttataaagatcgt |
39955818 |
T |
|
| Q |
208 |
tggctttagcaatcaattgaacaatgaatgctttcctctgtggcagaaaagaagcttttaatgactctgcttgttgtgcacttcacattaagatataggg |
307 |
Q |
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| T |
39955817 |
tggctttagcaatcaattgaacaatgaatgctttcctctgtggcagaaaagaagcttttaatgactctgcttgttgtgcacttcacattaagatataggg |
39955718 |
T |
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| Q |
308 |
gaaattaaactttttaggcatgaaaaggagagatgggcacgttgggttgaatacagtattagacaattaaataaaattgtaacatttggaatattgttaa |
407 |
Q |
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| T |
39955717 |
gaaattaaacttttgaggcatgaaaaggagagatgaataca---ggtattagaca--aataaataaataaataaaattgtaacatttggaatattgttaa |
39955623 |
T |
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| Q |
408 |
gaatattaattagttctgtaataaagtacactaggattggaagacagaacatattttattgatttctaggctactatcataaggcactaacatattacat |
507 |
Q |
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| T |
39955622 |
gaatattaattagttctgtaataaagtacactaggattggaa------acatattttattgatttctaggctactatcataaggcactaacatattacat |
39955529 |
T |
|
| Q |
508 |
atgtatatatcatctttataatattgtttagagaactatatagtattttaaactaattaaaccatatctagagagctacaatactaggcttattccttgg |
607 |
Q |
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| T |
39955528 |
atgtatatatcatctttataatattgtttagagaactatatagtattttaaactaattgaaccatatctagagagctacaatactaggcttattccttgg |
39955429 |
T |
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| Q |
608 |
aatccccttaagcaatttccctgagaatgtctcaataagtttgttgaactcaaatggggtcttccatttcttggcagattccttagctatgaggcttctc |
707 |
Q |
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| T |
39955428 |
aatccccttaagcaatttccctgagaatgtttcaataagtttgttgaactcaaatggggtcttccatttcttggcagattccttagctatgaagcttctc |
39955329 |
T |
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| Q |
708 |
attcttacattttcctgcttcagcatatctattgttgaactcagctgtcttattacctctattttctctttg |
779 |
Q |
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| T |
39955328 |
atttttacattttcctgcttcagcatatctattgttgaactcagctgtcttattacctctattttctctttg |
39955257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 844 - 928
Target Start/End: Complemental strand, 39955193 - 39955111
Alignment:
| Q |
844 |
atcaacatcattacttcatcacaaatgggtatattctctaaaaccttctctcttttttggcttcattctctttcctgtgtctttc |
928 |
Q |
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| T |
39955193 |
atcaacatcattacttcatcacaaatgg-tatattctctaaaactttctctctttttt-gcttcattctctttcttgtgtctttc |
39955111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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