View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4835-Insertion-2 (Length: 923)
Name: NF4835-Insertion-2
Description: NF4835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4835-Insertion-2 |
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Alignment Details
Target: chr1 (Bit Score: 362; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 8 - 418
Target Start/End: Complemental strand, 559848 - 559428
Alignment:
| Q |
8 |
cccactacatcagctataatctcttcctaatgtagtgagatgtatcattatcacgataatcgtctaagaaagagtgcattaaagtcaactcaaccaactg |
107 |
Q |
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| T |
559848 |
cccactacatcagctataatctcttcctaatgtagtgagatgtatcattgtcacgataatcgtctaagaaagagtgcattaaagtcaactcaaccaacta |
559749 |
T |
|
| Q |
108 |
caatttttcataattgtgag----------tgccactagactctcaccctattaatatcctaaatttcccttaaccacacaagaaggtcttcaatattgt |
197 |
Q |
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| T |
559748 |
taatttttcataattgcgaggaaaaccaactgccactagactctcaccctattaatatcctaaatttcccttaaccacacaagaaggtcttcaatattgt |
559649 |
T |
|
| Q |
198 |
tctcgttattattcctgccagtgttaatacaaagaacatatccaaccaaagatatagcatatcatgtgtcttcactctatgtttgacaacttattcgaga |
297 |
Q |
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| T |
559648 |
tctcgttattattcctgccagtgttaatacaaagaacatatccaaccaaagatatagcatatcatgtgtcttcactctatgtttgacaacttattcaaga |
559549 |
T |
|
| Q |
298 |
gaaaaggaaaagatttaagattatctcaattgtgtatatgaaaaatatgatgttgatttcaagagagaaaaatttgaatcaatgttgtgtgaattctttt |
397 |
Q |
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| T |
559548 |
gaaaaagaaaagatttaagattatctcaattgtgtatatgaaaaatatgatgttgatttcaagagagaaaaatttgaatcaatgttgtgtgaattctttt |
559449 |
T |
|
| Q |
398 |
ttatcttctttttctgatgtg |
418 |
Q |
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| T |
559448 |
ttatcttctttttctgatgtg |
559428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 417 - 679
Target Start/End: Complemental strand, 559257 - 558991
Alignment:
| Q |
417 |
tggagcaacagaaagaaagaaaaaagcacatgttcaagtagaattgaccatctcaatcatgaaatgtttgaaagattaattagcagacaagagattctaa |
516 |
Q |
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| T |
559257 |
tggagcaacagaaagcaa-aaaaaagcacatgttcaagtagaattgaccatctcaatcatgaaatgtttgaaagattaattagcagacaagagattttaa |
559159 |
T |
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| Q |
517 |
ataggttagccaaaccaataaataaaccacaaacacctcctaccattttatctcaacaaacttcagtcaagccactgac-------aatttaatcaattt |
609 |
Q |
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| T |
559158 |
ataggttagccaaaccaataaataaaacacaaacacctcctagcattttatctcaacaaacttcagtcaagccactgacactttaaagtttaatctattt |
559059 |
T |
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| Q |
610 |
ttctaagaatctcttgttttaaccaaagagactcttacaaaagaatatgtctcattggctgtttccatgt |
679 |
Q |
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| T |
559058 |
ttctaagaatctcttgttttaaccaaagagactcttacaaaaga--atgtctcatgggcttttttcatgt |
558991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 185 - 418
Target Start/End: Complemental strand, 557974 - 557743
Alignment:
| Q |
185 |
tcttcaatattgttctcgttattattcctgccagtgttaatacaaagaacatatccaaccaaagatatagcatatcatgtgtcttcactctatgtttgac |
284 |
Q |
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| T |
557974 |
tcttcaatgttgttctcattattgtttctgctagtgttgttacaaagaacatatcgaaccaaagttatagcatct--tgtatctccactttatgtttgac |
557877 |
T |
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| Q |
285 |
aacttattcgagagaaaaggaaaagatttaagattatctcaattgtgtatatgaaaaatatgatg-ttgatttcaagagag--aaaaatttgaatca--a |
379 |
Q |
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| T |
557876 |
aaattattcgagagaaaa----aagatttaagattgtctcaattgtgtatatgaaaaatattatgctagatttcaagagagataaaaatttgaatcaata |
557781 |
T |
|
| Q |
380 |
tgttgtgtgaattcttttttatcttctttttctgatgtg |
418 |
Q |
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| T |
557780 |
tgttgtgttaacttctttttatcctc-ttttctgatgtg |
557743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 23 - 123
Target Start/End: Complemental strand, 558147 - 558047
Alignment:
| Q |
23 |
ataatctcttcctaatgtagtgagatgtatcattatcacgataatcgtctaagaaagagtgcattaaagtcaactcaaccaactgcaatttttcataatt |
122 |
Q |
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| T |
558147 |
ataatctcttcctaatacagtgagatgtattattgccacgataatcgtccaagaaagagtgcattaaagttaactcaaccaactataatatttcataatt |
558048 |
T |
|
| Q |
123 |
g |
123 |
Q |
| |
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| T |
558047 |
g |
558047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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