View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4835-Insertion-5 (Length: 836)
Name: NF4835-Insertion-5
Description: NF4835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4835-Insertion-5 |
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Alignment Details
Target: chr7 (Bit Score: 412; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 7 - 574
Target Start/End: Original strand, 35561260 - 35561829
Alignment:
| Q |
7 |
acataggttggaatagatcatcgtacatgatacaatagttgataatcatcgaaaatattatgaactaaagaaacacaaactaagtatttaaacatcaaac |
106 |
Q |
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| T |
35561260 |
acataagttggaatagatcatcgtacatgatacaatagttgataatcatcgaaaatattatgaactaaagaaacacaaactgagtatttaaacatcaaac |
35561359 |
T |
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| Q |
107 |
cttcaacnnnnnnnnnn--gtattttacaatcaatatgacgtttgaaattagaaactgcaaatcttaacttcaaactagaatgaattctaagttaaaatt |
204 |
Q |
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| T |
35561360 |
cttcaacaaaaaaataaaagtattttacgatcaatataacgtttgaaattagaaactacaaatcttaacttcaaactagaatcaattctaagttaaaatt |
35561459 |
T |
|
| Q |
205 |
aaaatttaataaacattatttaagcatgttgaaggtaattttatgtgtctagaattatggttagttcgatgaaattatagtacataatactacgatttgc |
304 |
Q |
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| T |
35561460 |
aaattttaataaacattatttaagcatgttgaaggtaattttatgtgtctagaattatggttagttcgataaaattatagtacataatactacgatttgc |
35561559 |
T |
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| Q |
305 |
ttgaaactacaaagtgtagcatttgaaaatttacggtagctcgtcgtgattctttcaaactgatcatactgaatctaaacattcattagtatatcaattt |
404 |
Q |
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| T |
35561560 |
ttgaaactacaaagtgtagcatttgaaaaattacgatagctcgtcgtgattctttcaaactgatcatactgaatctaaacattcattagtatatcaattt |
35561659 |
T |
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| Q |
405 |
tgagtgaatagttgctacattatgtatgccaannnnnnnnnggttaaataagttttgcccccttatcttg-nnnnnnnnngttttgctctctataaaatt |
503 |
Q |
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| T |
35561660 |
tgagtgaatagttgctacattatgtatgcc-atttttttttggttaaataagttttgctcccttatcttgaaaaaaaaaagttttgctctctataaaatt |
35561758 |
T |
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| Q |
504 |
ttcaaactttgttttttagttcctctaaaaaatttcaccaagttttagtccccaaatatttttcaccatca |
574 |
Q |
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| T |
35561759 |
ttcaaactttattttttagttcctctaaaaaatttcaccaagttttagtccccaaatatttttcaccatca |
35561829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 672 - 807
Target Start/End: Original strand, 35561926 - 35562064
Alignment:
| Q |
672 |
cacgtaatacaactttccttcttgatgaggtaccttaaagttttgataa-cgagaaattgaaaccatcagactcaac--ttttatttcatcactttctac |
768 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| ||||||| |||| |||||||||||||||| |
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| T |
35561926 |
cacgtaatacaactttccttcttgatgaggtagcttaaagttttgataaacgagaaattgaaaccatctgactcaaaaattttgtttcatcactttctac |
35562025 |
T |
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| Q |
769 |
aacccatttttgaattgcttcaaaggagaatgaagcaac |
807 |
Q |
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| T |
35562026 |
aacccatttttgaattgcttcaaaggagaaagaagcaac |
35562064 |
T |
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Back To:
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