View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4835-Insertion-6 (Length: 677)
Name: NF4835-Insertion-6
Description: NF4835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4835-Insertion-6 |
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| [»] scaffold2113 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 395; Significance: 0; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 43 - 518
Target Start/End: Original strand, 28018782 - 28019263
Alignment:
| Q |
43 |
ctctagtccttggaataaagtactagaaatttcttatttttctacggatttttccaaggatttaggtgtttaggtaataccttcatgagatattgtttcc |
142 |
Q |
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|||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
28018782 |
ctctagtcctatgaataaagtactagaaatttctgatttttctacggatttttccaaggaaataggtgtttaggtaataccttcatgagatattgtttcc |
28018881 |
T |
|
| Q |
143 |
aaactttgaaatcctcaagtattttata------ttgcataataaagaaataaaggaaactaaaagttagttgtgtagataacttgcttcacaagttatc |
236 |
Q |
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||||||||||||||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |
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| T |
28018882 |
aaactttgaaatcctcaagtaatttatatatatattgcataatgaagaaataaaggaaactaaaagttagttgtatagatagcttgcttcacaagttatc |
28018981 |
T |
|
| Q |
237 |
taggtatttagtttgaactaactgtattaggatttagattgcatacaattgatgcaccatagttattccattcatctacgatctctatataagttgtaat |
336 |
Q |
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|||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
28018982 |
taggtagtttgtttgaactaactgtattaggatttagattgcatacaattgatgtaccatagttattctattcatctacgatctctatataagttgtaat |
28019081 |
T |
|
| Q |
337 |
gcttctttgattcaattaatgagaatttgcttcattcatttcttccatcaagtaatgtttgattcattacacttgccataatgaatcgtaacaaagttag |
436 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |
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| T |
28019082 |
gcttctttgattcaattaatgagaatttgcttcattcatttcttccatcaagtaatgtttgatttattacacttgccataatgaatcataacaaagttag |
28019181 |
T |
|
| Q |
437 |
ttacgattcagttacacatgctttcgccattgatgcttcttttcaatcttcatgattcttccttcttgttgctcgttgaaga |
518 |
Q |
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| T |
28019182 |
ttacgattcagttacacatgctttcgccattgatgcttcttttcaatcttcatgattcttcctttttgttgctcgttgaaga |
28019263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 178 - 364
Target Start/End: Original strand, 12217216 - 12217401
Alignment:
| Q |
178 |
ataaagaaataaaggaaactaaaagttagttgtgtagataacttgcttcacaagttatctaggtatttagtttgaactaactgtattaggatttagattg |
277 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| ||||||||||| | ||||||||||||| ||| |||||| ||||||||||| |||| ||||||| | |
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| T |
12217216 |
ataaagaaataaaggaaactaagagttagttgtatagataacttgttccacaagttatcta-gtagttagttgtaactaactgtaataggttttagatag |
12217314 |
T |
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| Q |
278 |
catacaattgatgcaccatagttattccattcatctacgatctctatataagttgtaatgcttctttgattcaattaatgagaattt |
364 |
Q |
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| T |
12217315 |
catacagttggtgtattatagttgttctagtcgtctaggatctatatataagctgtaatgctcatatgattcaatcaatgagaattt |
12217401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 170 - 381
Target Start/End: Original strand, 1143864 - 1144076
Alignment:
| Q |
170 |
attgcataataaagaaataaaggaaactaaaagttagttgtgtagataacttgcttcacaagttatctaggtatttagtttgaactaactgtattaggat |
269 |
Q |
| |
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|||||||||| ||||||||| ||||| ||| | ||| ||| |||||||||| | |||||||||||||| || |||||| |||||||||||||||||| |
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| T |
1143864 |
attgcataatgaagaaataagggaaaataagaattaattgcagagataacttgttccacaagttatctagctagttagttataactaactgtattaggat |
1143963 |
T |
|
| Q |
270 |
ttagattgcatacaattgatgcaccatagttattccattcatctacgatctctatataagttgtaatgcttctttgatt-caattaatgagaatttgctt |
368 |
Q |
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| T |
1143964 |
ctagatagtatacagttgatgtaccattgttatcctactcatcttgaaactctatataaactgtaatgctcatttggttccaattaatgagaattttatt |
1144063 |
T |
|
| Q |
369 |
cattcatttcttc |
381 |
Q |
| |
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||||||||||||| |
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| T |
1144064 |
cattcatttcttc |
1144076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 63 - 159
Target Start/End: Original strand, 28076222 - 28076318
Alignment:
| Q |
63 |
tactagaaatttcttatttttctacggatttttccaaggatttaggtgtttaggtaataccttcatgagatattgtttccaaactttgaaatcctca |
159 |
Q |
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||||||||| | |||||||||||| |||||||||||| |||||||| |||||||||||||||| | |||||||||||||||||||||||||||||| |
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| T |
28076222 |
tactagaaagtccttatttttctatggatttttccaaagatttaggcgtttaggtaatacctttgtcagatattgtttccaaactttgaaatcctca |
28076318 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 63 - 162
Target Start/End: Original strand, 28047751 - 28047850
Alignment:
| Q |
63 |
tactagaaatttcttatttttctacggatttttccaaggatttaggtgtttaggtaataccttcatgagatattgtttccaaactttgaaatcctcaagt |
162 |
Q |
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||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |||||| | |||||||||| |
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| T |
28047751 |
tactagaaattccttttttttctacggatttttctaaggatttaggtgtttaggtaataccttcgtgagatattgttttggaacttttatatcctcaagt |
28047850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 11 - 151
Target Start/End: Original strand, 28036469 - 28036617
Alignment:
| Q |
11 |
tacactttgccataaactccattgtttgtattctctagtccttggaataaagta--------ctagaaatttcttatttttctacggatttttccaagga |
102 |
Q |
| |
|
||||||||| ||| ||||| |||||||||| | |||||||||||||||| | || ||||||| | ||| ||||||||||||||| ||||| || |
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| T |
28036469 |
tacactttgtcatgaactctattgtttgtaatttctagtccttggaatagaatagtacactactagaaactccttgtttttctacggatttctccaatga |
28036568 |
T |
|
| Q |
103 |
tttaggtgtttaggtaataccttcatgagatattgtttccaaactttga |
151 |
Q |
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||||||||||||||||||| ||| ||||||||||| || |||||||| |
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| T |
28036569 |
tttaggtgtttaggtaatatctttgtgagatattgtgtctgaactttga |
28036617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 63 - 158
Target Start/End: Original strand, 28004177 - 28004275
Alignment:
| Q |
63 |
tactagaaatttcttatttttctacggatttttccaaggatttaggtgtttaggtaataccttcatgagatattgtttcc---aaactttgaaatcctc |
158 |
Q |
| |
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||||||||||| | ||||| ||||||||||| ||| ||||||||||||||||||| ||||| || |||| ||||||||| ||||||||||||||| |
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| T |
28004177 |
tactagaaattccatatttgtctacggatttctcctaggatttaggtgtttaggttataccatcgtgagtaattgtttcctgtgaactttgaaatcctc |
28004275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 28004096 - 28004143
Alignment:
| Q |
11 |
tacactttgccataaactccattgtttgtattctctagtccttggaat |
58 |
Q |
| |
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||||||||||||| ||||| |||||||||| |||| |||||||||||| |
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|
| T |
28004096 |
tacactttgccatgaactctattgtttgtaatctccagtccttggaat |
28004143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 5e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 167 - 381
Target Start/End: Complemental strand, 5858156 - 5857942
Alignment:
| Q |
167 |
tatattgcataataaagaaataaaggaaactaaaagttagttgtgtagataacttgcttcacaagttatctaggtatttagtttgaactaactgtattag |
266 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |||||||| | | |||| |||||| ||||||||||| || || || ||| |||||||||| ||| |
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|
| T |
5858156 |
tatattgcataatgaagaaataaaggaaactaatagttagttatatggatagcttgctccacaagttatcaagttagttggttgtaactaactgtcatag |
5858057 |
T |
|
| Q |
267 |
gatttagattgcatacaattgatgcaccatagttattccattcatctacgatctctatataagttgtaatgcttctttgattcaattaatgagaatt-tg |
365 |
Q |
| |
|
|| |||||| ||||||||||| | | ||||||||| | ||||| | |||||||||||||||||||||||| || || || |||||||||||| | |
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| T |
5858056 |
ga-ttagatagcatacaattggtatattgtagttattctactcatcaaggatctctatataagttgtaatgctactatgttttcgttaatgagaattata |
5857958 |
T |
|
| Q |
366 |
cttcattcatttcttc |
381 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
5857957 |
cttcattcatttcttc |
5857942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 169 - 236
Target Start/End: Complemental strand, 36137229 - 36137162
Alignment:
| Q |
169 |
tattgcataataaagaaataaaggaaactaaaagttagttgtgtagataacttgcttcacaagttatc |
236 |
Q |
| |
|
||||||||||| |||||||||||||||||| |||||||| | | |||| |||||||||||||||||| |
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|
| T |
36137229 |
tattgcataatgaagaaataaaggaaactattagttagttatatggatagcttgcttcacaagttatc |
36137162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 169 - 270
Target Start/End: Original strand, 36143635 - 36143736
Alignment:
| Q |
169 |
tattgcataataaagaaataaaggaaactaaaagttagttgtgtagataacttgcttcacaagttatctaggtatttagtttgaactaactgtattagga |
268 |
Q |
| |
|
||||||||||| |||||||||||||||||| || ||||| | | |||| |||||||||||||||||| || || || ||| |||||||||| ||||| |
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|
| T |
36143635 |
tattgcataatgaagaaataaaggaaactactaggtagttatttggatagcttgcttcacaagttatcaagttagtttgttgtaactaactgtcatagga |
36143734 |
T |
|
| Q |
269 |
tt |
270 |
Q |
| |
|
|| |
|
|
| T |
36143735 |
tt |
36143736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 236
Target Start/End: Original strand, 19432344 - 19432411
Alignment:
| Q |
169 |
tattgcataataaagaaataaaggaaactaaaagttagttgtgtagataacttgcttcacaagttatc |
236 |
Q |
| |
|
||||||||||| |||||||||||||||||| |||||||| | | |||| |||||| |||||||||| |
|
|
| T |
19432344 |
tattgcataatgaagaaataaaggaaactattagttagttatatggatatcttgctaaacaagttatc |
19432411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2113 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold2113
Description:
Target: scaffold2113; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 79 - 131
Target Start/End: Original strand, 146 - 198
Alignment:
| Q |
79 |
tttttctacggatttttccaaggatttaggtgtttaggtaataccttcatgag |
131 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||| ||||||||||| |||| |
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|
| T |
146 |
tttttttatggatttttccaaggatttaggtgtttaagtaataccttcgtgag |
198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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