View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4835-Insertion-7 (Length: 534)

Name: NF4835-Insertion-7
Description: NF4835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4835-Insertion-7
NF4835-Insertion-7
[»] chr1 (3 HSPs)
chr1 (8-287)||(34683544-34683823)
chr1 (290-534)||(34683342-34683586)
chr1 (290-468)||(34699642-34699820)


Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 8 - 287
Target Start/End: Complemental strand, 34683823 - 34683544
Alignment:
Q  8 gtaagtacgttacacatagacatacacataattggcttgtaattatttcttcaatttttcttcttgtatacaatataactgatctcttatacatgtatca 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||    
T  34683823 gtaagtacgttacacatagacatacacataattggcttgtaattatttcttccatttttcttcttgtatataatataactgatctcttatacatgtatca 34683724  T
Q  108 tgtaatatgtcatggatcgaagtttatatacacaaatagatgtattacttattgcttcctcattattcaaaccatctgcagtgtcttgattactgtctcc 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34683723 tgtaatatgtcatggatcgaagtttatatacacaaatagatgtattacttattgcttcctcattattcaaaccatctgcagtgtcttgattactgtctcc 34683624  T
Q  208 tcatcattctgttggtcgggtgtgatcttgttgtctgttgaatgttgtttggtcttgtcacatttggacatttctggttt 287  Q
    ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34683623 tcatcattctgttggtctggtgagatcttgttgtctgttgaatgttgtttggtcttgtcacatttggacatttctggttt 34683544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 290 - 534
Target Start/End: Complemental strand, 34683586 - 34683342
Alignment:
Q  290 ttgaatgttgtttggtcttgtcacatttggacatttctggtttaaacttagctaaatctgataattcttcaacacatttcacaatgtcttccacacgagc 389  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  34683586 ttgaatgttgtttggtcttgtcacatttggacatttctggtttaaacttagctaaatctgataattcttcaacacatttcacaatgtcttctacacgagc 34683487  T
Q  390 tacaatttcactaagcaaagaaacaactgtgaccacttgaattaattctattattgggatttcgagttttgcatcaccatcttttgcannnnnnngtgtg 489  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||    
T  34683486 tacaatttcactaagcaaagaaacaactgtgaccacttgaattaattctattattgggatttcgagttttgcatcaccatcttttgcatttttttgtgtg 34683387  T
Q  490 tttggataagattttaataaattctgaagctctagggctgcatta 534  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  34683386 tttggataagattttaataaattctgaagctctagggctgcatta 34683342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 290 - 468
Target Start/End: Complemental strand, 34699820 - 34699642
Alignment:
Q  290 ttgaatgttgtttggtcttgtcacatttggacatttctggtttaaacttagctaaatctgataattcttcaacacatttcacaatgtcttccacacgagc 389  Q
    ||||| ||||||| |  |||||||| || |||||||||||||| || |||||||| | ||||| ||||||||||| ||||||||||||||||||||| ||    
T  34699820 ttgaacgttgtttagatttgtcacactttgacatttctggtttgaatttagctaattttgatagttcttcaacacttttcacaatgtcttccacacgtgc 34699721  T
Q  390 tacaatttcactaagcaaagaaacaactgtgaccacttgaattaattctattattgggatttcgagttttgcatcacca 468  Q
    |||| ||||| ||||||||||||  || |||||||||||||||| ||| |||||||||||||| | |||||||||||||    
T  34699720 tacagtttcaataagcaaagaaattaccgtgaccacttgaattacttccattattgggatttccatttttgcatcacca 34699642  T

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