View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4835-Insertion-9 (Length: 425)
Name: NF4835-Insertion-9
Description: NF4835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4835-Insertion-9 |
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Alignment Details
Target: chr2 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 6 - 421
Target Start/End: Original strand, 36896570 - 36896983
Alignment:
| Q |
6 |
cacaagatgcaatgccagtggatttggataagaagaaggggattgtatatgcatcttcgccgggttcaccatacggtcctatgaagataattaacaacat |
105 |
Q |
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| T |
36896570 |
cacaagatgcaatgccagtggatttggataagaagaaggggattgtatatgcatcttcgccgggttcatcatacggtcctatgaagataattaacaacat |
36896669 |
T |
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| Q |
106 |
cttcagctcagatcttgtgtttaatcttcagagagaggaagaatcacggaacattctggaaaatggtgaagtgggtgtttctggaagggattttgctttg |
205 |
Q |
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| T |
36896670 |
cttcagctcagatctcgtgtttaatcttcagagagaggaagaatcacggaacattctggaaaatggtgaagtgggtgtttctggtagggattttgctttg |
36896769 |
T |
|
| Q |
206 |
gtttctggtgatatgtggttgcaggcactcaagtggtgagtgctttattggattctgttgttttatatctgatttttgtgtgagcaatggtggaaattta |
305 |
Q |
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| T |
36896770 |
gtttctggtgatatgtggttgcaggcactcaagtggtgagtgctttattcgattctgttgttttatatctgatttttgtgtgagcaatgatggaaattta |
36896869 |
T |
|
| Q |
306 |
aagttgaactaaattaggttcaagttagattgttccatgatgcaacattttgatttcgatatatggtttagatttatgatcttttataactttgggtgat |
405 |
Q |
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| T |
36896870 |
aagttgaactaaattaggttcaagttagattgttccatgatgcagcattttgatttcgatatatggtttagatttatgatc--ttataactttgtgtgat |
36896967 |
T |
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| Q |
406 |
ttaagtagttggattg |
421 |
Q |
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| T |
36896968 |
ttaagtagttggattg |
36896983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 15 - 135
Target Start/End: Original strand, 24192129 - 24192249
Alignment:
| Q |
15 |
caatgccagtggatttggataagaagaaggggattgtatatgcatcttcgccgggttcaccatacggtcctatgaagataattaacaacatcttcagctc |
114 |
Q |
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|||||| |||||||||||| ||||||||||||||||||||| ||||||| | | ||| | ||||||| ||||||||| | |||||||||||||| || |
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| T |
24192129 |
caatgctagtggatttggaaaagaagaaggggattgtatatccatcttcatcatgatcatcttacggtcatatgaagatcaataacaacatcttcaattc |
24192228 |
T |
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| Q |
115 |
agatcttgtgtttaatcttca |
135 |
Q |
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|||||| |||||||||||||| |
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| T |
24192229 |
agatctcgtgtttaatcttca |
24192249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 36 - 134
Target Start/End: Complemental strand, 24192410 - 24192312
Alignment:
| Q |
36 |
agaagaaggggattgtatatgcatcttcgccgggttcaccatacggtcctatgaagataattaacaacatcttcagctcagatcttgtgtttaatcttc |
134 |
Q |
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| T |
24192410 |
agaagaaggagattgtatatgcatctttgtcatgatcatattacactcctctgaagatcattaacaacatcttcagctcagatctcgtgctcaatcttc |
24192312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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