View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4835_high_1 (Length: 444)
Name: NF4835_high_1
Description: NF4835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4835_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 20 - 437
Target Start/End: Original strand, 39380865 - 39381282
Alignment:
| Q |
20 |
actcaacaccttattatggaaataactttaaatcaccacttaagttaagtgcttatttcagtagataacctcaaataagtgaattcaaactattttcatg |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
39380865 |
actcaacaccttattatggaaataactttaaatcaccacttaagttaagtgcttatttcagtagataacctcaaataagtgaagtcaaactattttcatt |
39380964 |
T |
|
| Q |
120 |
taaactatgtgctttttccctaaattattatggagagctaagagcttatgtaaataagttcaaaattgtttatggacatgtaataataaataagttgttt |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
39380965 |
taaactatgtgctttttccctaaattattatggagagctaagagcttatgtaaataagttcaaaattgtttatggacatttaataataaataagttgttt |
39381064 |
T |
|
| Q |
220 |
ctataaactctcttaaagagattcccaaatacttatgctagtaggtaatctcaaataaatcggtttaaatagacacttactatcttgattcaataatctg |
319 |
Q |
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||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |
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| T |
39381065 |
ctataaactctcttaaagatattcacaaatacttatgctagtaggtaatctcaaataagtcggtttaaatatacacttactatcttgattcaataatctg |
39381164 |
T |
|
| Q |
320 |
tttctacaggttctgctaacagcatgctctctactcaacatgtttcccatgctaacaaattcgtcaatgacctcactcattccgacatgtaacccctttt |
419 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
39381165 |
tttctgcaggttctgctaacagcatgctctctactcaacatgtttcccatgctaacaaattcatcaatgacctcactcattccgacatgtaacccctttt |
39381264 |
T |
|
| Q |
420 |
acctccattttcatctct |
437 |
Q |
| |
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|||||||||||||||||| |
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| T |
39381265 |
acctccattttcatctct |
39381282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 109
Target Start/End: Original strand, 24048645 - 24048690
Alignment:
| Q |
64 |
ttaagtgcttatttcagtagataacctcaaataagtgaattcaaac |
109 |
Q |
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| T |
24048645 |
ttaagtacttatgtcagtagataaactcaaataagtaaattcaaac |
24048690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 160 - 205
Target Start/End: Complemental strand, 6987783 - 6987738
Alignment:
| Q |
160 |
agagcttatgtaaataagttcaaaattgtttatggacatgtaataa |
205 |
Q |
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|||||||||| ||||||||| ||||| |||||||||||||| |||| |
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| T |
6987783 |
agagcttatggaaataagttgaaaatagtttatggacatgtcataa |
6987738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 69 - 109
Target Start/End: Original strand, 2811581 - 2811621
Alignment:
| Q |
69 |
tgcttatttcagtagataacctcaaataagtgaattcaaac |
109 |
Q |
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| T |
2811581 |
tgcttatgccagtagataacctcaaataagtcaattcaaac |
2811621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 109
Target Start/End: Original strand, 3973648 - 3973692
Alignment:
| Q |
65 |
taagtgcttatttcagtagataacctcaaataagtgaattcaaac |
109 |
Q |
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||||||||||| ||||| ||||| ||||||||||||||| ||||| |
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| T |
3973648 |
taagtgcttatatcagtggataagctcaaataagtgaatccaaac |
3973692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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