View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4835_high_10 (Length: 325)
Name: NF4835_high_10
Description: NF4835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4835_high_10 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 9 - 325
Target Start/End: Complemental strand, 39381181 - 39380865
Alignment:
| Q |
9 |
agcagaacctgtggaaacagattattgaatcaagatagtaagtgtctatttaaaccgatttatttgagattacctactagcataagtatttgggaatctc |
108 |
Q |
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| T |
39381181 |
agcagaacctgcagaaacagattattgaatcaagatagtaagtgtatatttaaaccgacttatttgagattacctactagcataagtatttgtgaatatc |
39381082 |
T |
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| Q |
109 |
tttaagagagtttatagaaacaacttatttattattacatgttcataaacaattttgaacttatttacataagctcttagctctccataataatttaggg |
208 |
Q |
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| T |
39381081 |
tttaagagagtttatagaaacaacttatttattattaaatgtccataaacaattttgaacttatttacataagctcttagctctccataataatttaggg |
39380982 |
T |
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| Q |
209 |
aaaaagcacatagtttacatgaaaatagtttgaattcacttatttgaggttatctactgaaataagcacttaacttaagtggtgatttaaagttatttcc |
308 |
Q |
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| T |
39380981 |
aaaaagcacatagtttaaatgaaaatagtttgacttcacttatttgaggttatctactgaaataagcacttaacttaagtggtgatttaaagttatttcc |
39380882 |
T |
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| Q |
309 |
ataataaggtgttgagt |
325 |
Q |
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| T |
39380881 |
ataataaggtgttgagt |
39380865 |
T |
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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 281
Target Start/End: Complemental strand, 24048690 - 24048645
Alignment:
| Q |
236 |
gtttgaattcacttatttgaggttatctactgaaataagcacttaa |
281 |
Q |
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| T |
24048690 |
gtttgaatttacttatttgagtttatctactgacataagtacttaa |
24048645 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 185
Target Start/End: Complemental strand, 41052936 - 41052896
Alignment:
| Q |
145 |
acatgttcataaacaattttgaacttatttacataagctct |
185 |
Q |
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| T |
41052936 |
acatgttcataaactatttttaacttatttccataagctct |
41052896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 276
Target Start/End: Complemental strand, 2811621 - 2811581
Alignment:
| Q |
236 |
gtttgaattcacttatttgaggttatctactgaaataagca |
276 |
Q |
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| T |
2811621 |
gtttgaattgacttatttgaggttatctactggcataagca |
2811581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 280
Target Start/End: Complemental strand, 3973692 - 3973648
Alignment:
| Q |
236 |
gtttgaattcacttatttgaggttatctactgaaataagcactta |
280 |
Q |
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| T |
3973692 |
gtttggattcacttatttgagcttatccactgatataagcactta |
3973648 |
T |
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