View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4835_high_13 (Length: 309)
Name: NF4835_high_13
Description: NF4835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4835_high_13 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 8 - 309
Target Start/End: Complemental strand, 3353457 - 3353156
Alignment:
| Q |
8 |
gcaccacagagaccattcaagacagagaagccggtaacgttagcgaaagtgaacccgagtgcgccaccggctaagctgagctcacctagtcgacccaaga |
107 |
Q |
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| T |
3353457 |
gcaccacagagaccattcaagacagagaagccggtaacgttagcgaaagtgaacccgagtgcgccaccggctaacctgagctcacctagtctacccaaga |
3353358 |
T |
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| Q |
108 |
atgctgttgtgatagctgtcttggcaaaccaagctaaattcatcaacaccattggaaaagctaatcttccttgaactcttagctcctctgaaagcaacga |
207 |
Q |
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| T |
3353357 |
atgctgttgtgatagctgtcttggcaaaccaagctaaattcatcaacaccattggaaaagctaatcttccttgaactcttagctcctctgaaagcaacga |
3353258 |
T |
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| Q |
208 |
cttccccggatttgtgtcgcattttcgggtttgtaatggtggaggaggtgaaggtggttggttagttttatggtttgagcagaggttttctcctaatttg |
307 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3353257 |
cttccccggatttatgtcgcattttcgggtttgtaatggtggaggaggtgaaggtggttggttagttttatggtttgagcagaggttttctcctaatttg |
3353158 |
T |
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| Q |
308 |
ca |
309 |
Q |
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|| |
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| T |
3353157 |
ca |
3353156 |
T |
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