View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4835_high_2 (Length: 437)
Name: NF4835_high_2
Description: NF4835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4835_high_2 |
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| [»] scaffold0512 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 27 - 407
Target Start/End: Original strand, 45172534 - 45172914
Alignment:
| Q |
27 |
caccgtaatgggagttctttctttgtcgtataataatatcaatcgtagagaaaccggcagtactaatcatacttatatttacaatcacccttcaatgatg |
126 |
Q |
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| T |
45172534 |
caccgtaatgggaggtctttctttgtcgtataataataacaatcgtagagaaaccggcagtactaatcatacttatattgacaatcacccttcaatgatg |
45172633 |
T |
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| Q |
127 |
atgagagagttggtactttcaatggcaatggattggcgtggatgtcaatatctgcaggcgaagatcgagaagggcaacccggcagatgttgagtttatcc |
226 |
Q |
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| T |
45172634 |
atgagagagttggtactttcaatggcaatggattggcgtggatgtcaatatctgcaggcgaagatcgagaagggcaacccggcagatgttgagtttatcc |
45172733 |
T |
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| Q |
227 |
tctcaatcgtgaaggatcatgtacaccagctaatgacacacaacaacaactacttgattaaaaagatttttcaagcaaggagtggtgtcaccccggagca |
326 |
Q |
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| T |
45172734 |
tctcaatcgtgaaggatcatgtacaccagctaatgacacacaacaacaactacttgattaaaaagatttttcaagcaaggagtggtgtcaccccggagca |
45172833 |
T |
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| Q |
327 |
gatggaatctattgttttatcgattatctcggatgatcaaaagctgaaacatgtgtgcatggacaatcgcgggtatgttgt |
407 |
Q |
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| T |
45172834 |
gatggaatctattgttttatcgattatctcggatgatcaaaagctgaaacatgtgtgcatggacaatcgcgggtatgttgt |
45172914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0512 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: scaffold0512
Description:
Target: scaffold0512; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 273 - 402
Target Start/End: Original strand, 2382 - 2507
Alignment:
| Q |
273 |
caactacttgattaaaaagatttttcaagcaaggagtggtgtcaccccggagcagatggaatctattgttttatcgattatctcggatgatcaaaagctg |
372 |
Q |
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||||||||||||| |||||||||||||| |||| || |||||||| |||| |||| || ||||||||||| ||||||| |||||||||||||||| |
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| T |
2382 |
caactacttgattcaaaagatttttcaaccaagaagcggtgtcacgtgggagtagattgactctattgtttt----attatctaggatgatcaaaagctg |
2477 |
T |
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| Q |
373 |
aaacatgtgtgcatggacaatcgcgggtat |
402 |
Q |
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| T |
2478 |
atatatgtgtgtatggacaattacgggtat |
2507 |
T |
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