View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4835_high_9 (Length: 326)
Name: NF4835_high_9
Description: NF4835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4835_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 320
Target Start/End: Original strand, 44513344 - 44513663
Alignment:
| Q |
1 |
gggagacaacccattgaagatgtcatacatggtggggtatggtacaaggtacccacaaaggatacaccataggggatcatcacttccatctattgctgtt |
100 |
Q |
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| T |
44513344 |
gggagacaacccattgaagatgtcatacatggtggggtttggtacaaggtacccacaaaggatacaccataggggatcatcacttccatctattgctgtt |
44513443 |
T |
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| Q |
101 |
caccctggcaagatccaatgttcagaaggattcagtgtaatggactcacaatcccctaaccccaacattctagtgggtacagttgttgggggacctgatt |
200 |
Q |
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| T |
44513444 |
caccctggcaagatccaatgttcagaaggattcagtgtaatggactcacaatcccctaaccccaacattctagtgggtacagttgttgggggacctgatt |
44513543 |
T |
|
| Q |
201 |
tgcatgatagctttccagatgaacgttcagattatgagcaatcagagccacctacttacatcaatgcacctcttgtaggagcattggcttatcttgcaca |
300 |
Q |
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| T |
44513544 |
tgcatgatagctttccagatgaacgttcagattatgagcaatcagagccagctacttacatcaatgcacctcttgtaggagcattggcttatcttgcaca |
44513643 |
T |
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| Q |
301 |
ttcatttggacaactccaaa |
320 |
Q |
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| T |
44513644 |
ttcatttggacaactccaaa |
44513663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 139; Significance: 1e-72; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 5 - 315
Target Start/End: Complemental strand, 39418136 - 39417826
Alignment:
| Q |
5 |
gacaacccattgaagatgtcatacatggtggggtatggtacaaggtacccacaaaggatacaccataggggatcatcacttccatctattgctgttcacc |
104 |
Q |
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| T |
39418136 |
gacaacccattgaagatgtcatacatggtggggtatggaccaaggtatccacaaaggatacaccacagaggatcatctcttccttcaatggctgtacacc |
39418037 |
T |
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| Q |
105 |
ctggcaagatccaatgttcagaaggattcagtgtaatggactcacaatcccctaaccccaacattctagtgggtacagttgttgggggacctgatttgca |
204 |
Q |
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| T |
39418036 |
caggaaagatccagtgttcagcaggtttcagtgtgatgagttcacaatctcctaatcccaacattctagtgggtgctgttgtcggaggaccagatcagca |
39417937 |
T |
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| Q |
205 |
tgatagctttccagatgaacgttcagattatgagcaatcagagccacctacttacatcaatgcacctcttgtaggagcattggcttatcttgcacattca |
304 |
Q |
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|||||| ||||||||| |||| |||||||||||||||||||||||| | ||||| | |||||||| |||||||| || | |||||||||||||| ||| |
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| T |
39417936 |
tgataggtttccagataaacggtcagattatgagcaatcagagccagcaacttatgttaatgcaccacttgtagggacacttgcttatcttgcacactca |
39417837 |
T |
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| Q |
305 |
tttggacaact |
315 |
Q |
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||||| ||||| |
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| T |
39417836 |
tttggtcaact |
39417826 |
T |
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