View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4835_low_1 (Length: 523)
Name: NF4835_low_1
Description: NF4835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4835_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 23 - 515
Target Start/End: Complemental strand, 35561260 - 35560769
Alignment:
| Q |
23 |
tcccaaatagttttgaccaggcttcttttccattcctcctttaaaaaagtgaaaccaaggaaagactatgtcagaccaacaaattacatcacaatttctt |
122 |
Q |
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| T |
35561260 |
tcccaaatagttttgaccaggcttcttttccattcctcctttaaaaaagtgaaaccatggaaagactatgtcagaccaacaaattacatcataatttctt |
35561161 |
T |
|
| Q |
123 |
atttttgggaggaaagtcttggaatgtggaagtt-ctatgtgactgtaccctcgcatcatttacttgaaagagatatttcatatataatataggtagagt |
221 |
Q |
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|||||||||||| |||||||||||| |||||||| ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
35561160 |
atttttgggagggaagtcttggaatatggaagtttctatgtgacggtaccctcgcatcatttacttgcaagagatatttcatatataatataggtagagt |
35561061 |
T |
|
| Q |
222 |
tttgagttccaacctaaataatttattcaccttaaaatagtttgttaagaaagtaaaagaaagaaccttgtttataataaagagtaaacaaaccctaaat |
321 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35561060 |
tttgagttcgaacctaaataatttattcaccttaaaatagtttgttaagaaagtaaaagaaagaaccttgtttataataaagagtaaacaaaccctaaat |
35560961 |
T |
|
| Q |
322 |
taataaataagtgagtgtattgtgtgtgtaattcagttttaatccacgctcttacagcttcccaacctctctcctacacggacaaaaacataggtgccac |
421 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35560960 |
taataaataagtgagtgtattgtgtgtgtaattcagttttaatccacgctcttacagcttcccaacctctctcctacacggacaaaaacataggtgccac |
35560861 |
T |
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| Q |
422 |
attgcagacacgtgacctggctaattatcaagtaagaaaattattctctgannnnnnnnnnnaaagaaaaattattctatgatggtgatgatga |
515 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||| |
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| T |
35560860 |
attgcagacacgtgacctggctaattctcaagtaagaaaattattctatga--tttttttttaaagaaaaattattctatgatgatgatgatga |
35560769 |
T |
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