View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4836-Insertion-1 (Length: 1070)
Name: NF4836-Insertion-1
Description: NF4836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4836-Insertion-1 |
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Alignment Details
Target: chr2 (Bit Score: 757; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 757; E-Value: 0
Query Start/End: Original strand, 131 - 1031
Target Start/End: Original strand, 32851304 - 32852200
Alignment:
| Q |
131 |
ctactaacatacccctaattatgttgcacctttttacaaaacctctgataaatactaggatgagacaaactaattctctccttgaagattaaaatcgtaa |
230 |
Q |
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| T |
32851304 |
ctactaacatacccctaattatgttgcacctttttacaaaacctctcataaatactaggatgagacaaactaattctctccttgaagattaaattcttaa |
32851403 |
T |
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| Q |
231 |
gacaatatcaattgtcaataaatcaatactactgcaaactttttaaatttttcagatttagtcaacatagtcctatatttagcgacagaggtggtacggg |
330 |
Q |
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| T |
32851404 |
gacagtatcaattgtcaataaatcaatactactgcaaactttttaaatttttctgatttagtcaacatagtcctatatttagcgacagaggtggtacggg |
32851503 |
T |
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| Q |
331 |
atttcatcagttacatgaaatttagatggagtgaaaaaggagaattacatatttccagccaacaatttgaccacagcaacagcaaaagatatctgtcaca |
430 |
Q |
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| T |
32851504 |
atttcatcagttacatgaaatttagatggagtgaaaaaggagaattacatatttccagccaacaatttgaccacagcaacaacaaaagatatctgtcaca |
32851603 |
T |
|
| Q |
431 |
gtgtgcaatcctgaaagcatcatcctttccactggtgttccagttgtggtgttcacgctggattatagacccaaaacataagcacaccagagagagtata |
530 |
Q |
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| T |
32851604 |
gtgtgcaatcctgaaagcatcatcctttccaccggtgttccagttgtggtgttcacgctggattatagacccaaaacataagcacaccagagagagtata |
32851703 |
T |
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| Q |
531 |
caatattcaggtctagtgatactatcagcaagtgatgacaattatcaaccattgtagtgttccctaattttcttttacttcatgtgaacaagatatgtta |
630 |
Q |
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| T |
32851704 |
caatattcaggtctagtgatactatcagcaagtaatgacaattatcaaccattgtagtgttccctaattttcttttacttcatgtgaacaagatatgtta |
32851803 |
T |
|
| Q |
631 |
cataggtatcatgttccaagttctactaatacacacacagtcattcaaaccagctttgttttccttctagacatgttcctttcaccaaaggtttttacca |
730 |
Q |
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| T |
32851804 |
cataggtatcatg----aagttctactaatacacacacagtcattcaaaccagctttattttccttctagacatgttcctttcaccaaaggtttttaccg |
32851899 |
T |
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| Q |
731 |
tcgtgcgaaaattccaaaaataggcatttatattgatagaagagaaacnnnnnnnggtcaatattttggcgatcatgtaatagttggtttatctacattc |
830 |
Q |
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| T |
32851900 |
tcgtgcgaaaattccaaaaataggcatttatattgatagaagagaaac-aaaaaaggtcaatattttggcgatcatgtaatagttggtttatctacattc |
32851998 |
T |
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| Q |
831 |
atataagaagaaatatgactcccaaaaagaaaa-gattaactaaaacatggtctaaacacaagaatgaaaatgatatctcgaataacaataacaatttaa |
929 |
Q |
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| T |
32851999 |
atataagaagaaatatgactccaaaaaagaaaaggattaactaaaacatggtctaaacacaagaatgaaaatgatatctcg-ataacaataacaatttta |
32852097 |
T |
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| Q |
930 |
aaacaaaggaatgttttatgtcagctgacacaaagtaaaaatata-ctgtttgaatagtgagcaaataaagttattggcttcactt-cctagttacatca |
1027 |
Q |
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| T |
32852098 |
aaacgaaggaatg-tttatgtcagctgacacaatgtaaaagtatacctgtttgaatagtgagcaaataaagttattggcttcacttccctaggtacatca |
32852196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 32851181 - 32851243
Alignment:
| Q |
8 |
caaaagttgtgaactaagagatttcatctactacctccttattttaaatataagatcctcgag |
70 |
Q |
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| T |
32851181 |
caaaagctgtgaactaagagatttcatctactacctccttattttaaatataagatcctcgag |
32851243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 371 - 462
Target Start/End: Original strand, 20283234 - 20283325
Alignment:
| Q |
371 |
agaattacatatttccagccaacaatttgaccacagcaacagcaaaagatatctgtcacagtgtgcaatcctgaaagcatcatcctttccac |
462 |
Q |
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|||||||| ||||||||||||| || || || |||| ||| ||||| ||||||| ||||| |||| |||||||||||||| |||||||| |
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| T |
20283234 |
agaattacgtatttccagccaattatctgcccgcagcgacaacaaaatatatctgcgacagtatgcatccctgaaagcatcattctttccac |
20283325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 371 - 462
Target Start/End: Original strand, 21069862 - 21069953
Alignment:
| Q |
371 |
agaattacatatttccagccaacaatttgaccacagcaacagcaaaagatatctgtcacagtgtgcaatcctgaaagcatcatcctttccac |
462 |
Q |
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|||||||| ||||||||||||| || || || |||| ||| ||||| ||||||| ||||| |||| |||||||||||||| |||||||| |
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| T |
21069862 |
agaattacgtatttccagccaattatctgcccgcagcgacaacaaaatatatctgcgacagtatgcatccctgaaagcatcattctttccac |
21069953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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