View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4836-Insertion-11 (Length: 278)
Name: NF4836-Insertion-11
Description: NF4836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4836-Insertion-11 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 107; Significance: 1e-53; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 172 - 278
Target Start/End: Original strand, 21465736 - 21465842
Alignment:
| Q |
172 |
aagaatgtggagatttaaatgttattttgtagcttagtttaagttaattgaattagggtcttaatggttgctagcattaaccgttagagccacattgcta |
271 |
Q |
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| T |
21465736 |
aagaatgtggagatttaaatgttattttgtagcttagtttaagttaattgaattagggtcttaatggttgctagcattaaccgttagagccacattgcta |
21465835 |
T |
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| Q |
272 |
ttcttga |
278 |
Q |
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| T |
21465836 |
ttcttga |
21465842 |
T |
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Target: chr6; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 8 - 102
Target Start/End: Original strand, 21465571 - 21465665
Alignment:
| Q |
8 |
aatggctcaaccaaatgtagaagtgaagctgctggaccaagtgttgttgatctagaattccatgattcactttctgaagatgcacttcaacaagg |
102 |
Q |
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| T |
21465571 |
aatggctcaaccaaatgtagaagtgaagctgctggaccaagtgttgttgatctagaattccatgattcactttctgaagatgcacttcaacaagg |
21465665 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 40
Target Start/End: Original strand, 21409784 - 21409816
Alignment:
| Q |
8 |
aatggctcaaccaaatgtagaagtgaagctgct |
40 |
Q |
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| T |
21409784 |
aatggctcaaccaaatgtagaagtgaagttgct |
21409816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 30074347 - 30074415
Alignment:
| Q |
8 |
aatggctcaaccaaatgtagaagtgaagctgctggaccaagtgttgttgatctagaattccatgattca |
76 |
Q |
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| T |
30074347 |
aatggctcaatcaaatgtagaagtgaagctgctggaccaagtgctgttgatctagaatttcatgattca |
30074415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 186 - 235
Target Start/End: Original strand, 30073163 - 30073212
Alignment:
| Q |
186 |
ttaaatgttattttgtagcttagtttaagttaattgaattagggtcttaa |
235 |
Q |
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| T |
30073163 |
ttaaatgttattttgtagcttagcttatgttaattgaattagggttttaa |
30073212 |
T |
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