View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4836-Insertion-12 (Length: 312)
Name: NF4836-Insertion-12
Description: NF4836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4836-Insertion-12 |
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Alignment Details
Target: chr8 (Bit Score: 134; Significance: 9e-70; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 8 - 145
Target Start/End: Original strand, 28466579 - 28466716
Alignment:
| Q |
8 |
ttggatacagttaattttccagttcatatgaagaacctgaccacagaggtttgaatcctttattaaacctaggaattatgtttaatatgttatggaataa |
107 |
Q |
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| T |
28466579 |
ttggatacagttaattttccagttcatatgaagaacctgaccacagaggtttgaatcctttattaaacctaggaattatgtttgatatgttatggaataa |
28466678 |
T |
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| Q |
108 |
gcatggtacattttattgactgtgactaataccctttt |
145 |
Q |
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| T |
28466679 |
gcatggtacattttattgactgtgactaataccctttt |
28466716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 195 - 312
Target Start/End: Original strand, 28475329 - 28475446
Alignment:
| Q |
195 |
aggatctggaacaattggctgctgaattgagggctgacattgtacacagtgtgtcagacactggtgggcatcttagctcaagcttgggagtggtggagtt |
294 |
Q |
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| T |
28475329 |
aggatctggaacaattggctgctgaattgagggctgacattgtacacagtgtgtcagacactggtgggcatcttagctcaagcttgggagtggtggagtt |
28475428 |
T |
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| Q |
295 |
atctgttgctcttcatca |
312 |
Q |
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||| |||||||||||||| |
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| T |
28475429 |
atcagttgctcttcatca |
28475446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 195 - 312
Target Start/End: Original strand, 28466779 - 28466896
Alignment:
| Q |
195 |
aggatctggaacaattggctgctgaattgagggctgacattgtacacagtgtgtcagacactggtgggcatcttagctcaagcttgggagtggtggagtt |
294 |
Q |
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| T |
28466779 |
aggatctggaacaattggctgctgaattgagggctgacattgtacacagtgtgtcagacaccggtggtcatcttagctcaagcttgggagtggtggagtt |
28466878 |
T |
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| Q |
295 |
atctgttgctcttcatca |
312 |
Q |
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||| |||||||||||||| |
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| T |
28466879 |
atcagttgctcttcatca |
28466896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 8 - 139
Target Start/End: Original strand, 28475000 - 28475132
Alignment:
| Q |
8 |
ttggatacagttaattttccagttcatatgaagaacctgaccacagaggtttgaatcctttat-taaacctaggaattatgtttaatatgttatggaata |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||| ||| ||||||||||| |
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| T |
28475000 |
ttggatacagttaattttccagttcatatgaagaacctgaccacagaggtttgaatcctttatcaaaaactaggatttatgtttcataggttatggaata |
28475099 |
T |
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| Q |
107 |
agcatggtacattttattgactgtgactaatac |
139 |
Q |
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| T |
28475100 |
tgtatggtacatttaattgactgtgactaatac |
28475132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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