View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4836-Insertion-15 (Length: 353)
Name: NF4836-Insertion-15
Description: NF4836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4836-Insertion-15 |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 8 - 236
Target Start/End: Original strand, 48882281 - 48882509
Alignment:
| Q |
8 |
ttttcgtcatacaatccttaaattcatcagatttcacaagctcggtctgatccaaaaccttaaacaaacccaaatgaatatgaagtgggtgattatcatc |
107 |
Q |
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| T |
48882281 |
ttttcgtcatacaatccttaaattcatcagatttcactagctcggtctgatccaaaaccttaaacaaacccaaatgaatatgaagtgggtgattatcatc |
48882380 |
T |
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| Q |
108 |
agtcaaattaatcacataccacacctcactggaccccactttcgcaatttctgtaacctgtgcttcgtaaggtttcgcgttgaaatacaagtgaatcggt |
207 |
Q |
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| T |
48882381 |
agtcaaattaatcacataccacacctcactggaccccactttcgcaatttctgtaacctgtgcttcgtaaggtttcgcgttgaaatacaagtgaatcggt |
48882480 |
T |
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| Q |
208 |
tcatcaatatcactcgtgtactcatacat |
236 |
Q |
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| T |
48882481 |
tcatcaatatcactcgtgtactcatacat |
48882509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 256 - 304
Target Start/End: Complemental strand, 36553557 - 36553509
Alignment:
| Q |
256 |
aaataccactttgggggcttatctgttttatattgtccaatatttatat |
304 |
Q |
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|||| ||||||||||||| ||| |||||||||||||||||||||||||| |
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| T |
36553557 |
aaatgccactttgggggcctatttgttttatattgtccaatatttatat |
36553509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 329
Target Start/End: Complemental strand, 36533379 - 36533311
Alignment:
| Q |
261 |
ccactttgggggcttatctgttttatattgtccaatatttatatagccctctttatttgatagtaatat |
329 |
Q |
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| T |
36533379 |
ccacttcgggggcctatctgttttatattgtcaaatatttgcattgctcacattatttgatagtaatat |
36533311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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