View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4836-Insertion-2 (Length: 900)

Name: NF4836-Insertion-2
Description: NF4836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4836-Insertion-2
NF4836-Insertion-2
[»] chr7 (22 HSPs)
chr7 (22-900)||(7327706-7328573)
chr7 (339-844)||(7310936-7311435)
chr7 (622-898)||(7306332-7306603)
chr7 (8-323)||(7311481-7311796)
chr7 (8-107)||(7306602-7306701)
chr7 (689-812)||(35205658-35205780)
chr7 (10-219)||(20456021-20456230)
chr7 (443-572)||(35205919-35206045)
chr7 (10-126)||(20414392-20414508)
chr7 (626-790)||(20414999-20415161)
chr7 (447-572)||(21210476-21210598)
chr7 (81-130)||(21210846-21210895)
chr7 (613-789)||(21210247-21210420)
chr7 (441-567)||(21218708-21218831)
chr7 (87-137)||(22525580-22525630)
chr7 (91-137)||(22534240-22534286)
chr7 (176-225)||(20414570-20414619)
chr7 (354-410)||(20456359-20456415)
chr7 (172-219)||(21210756-21210803)
chr7 (722-811)||(21218469-21218558)
chr7 (191-224)||(22525511-22525544)
chr7 (350-403)||(36260106-36260159)
[»] chr1 (1 HSPs)
chr1 (686-812)||(31442749-31442874)
[»] scaffold0064 (2 HSPs)
scaffold0064 (82-130)||(23807-23855)
scaffold0064 (680-812)||(24360-24491)
[»] scaffold0128 (1 HSPs)
scaffold0128 (8-47)||(3666-3705)
[»] chr4 (1 HSPs)
chr4 (91-138)||(2910627-2910674)
[»] chr5 (1 HSPs)
chr5 (733-811)||(42298342-42298420)


Alignment Details
Target: chr7 (Bit Score: 777; Significance: 0; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 777; E-Value: 0
Query Start/End: Original strand, 22 - 900
Target Start/End: Original strand, 7327706 - 7328573
Alignment:
Q  22 actagaaaaatatctgatagattaggttgtttcgatgatttcaattatgaatggaattcttggaggtttgtgttttgttatgataattcaaccaacactt 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7327706 actagaaaaatatctgatagattaggttgtttcgatgatttcaattatgaatggaattcttggaggtttgtgttttgttatgataattcaaccaacactt 7327805  T
Q  122 ataaggttgtagccttgcattataatagcaattttagcaaccctaaggttgaggtgagcatttttactttgggtgataatgtttggagaactattcaaac 221  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  7327806 ataaggttgtagccttgcattataatagcaattttagcaatcctaaggttgaggtgagcatttttactttgggtgataatgtttggaaaactattcaaac 7327905  T
Q  222 tttagctgttttgcctcttcagatagactttgcttattggagagtttacgagggtgtacaatttaattgcactgttaactggttggcacgcaatcggatt 321  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7327906 tttagctgttttgcctcttcagatagactttgcttattggagagtttacgagggtgtacaatttaattgcactgttaactggttggcacgcaatcggatt 7328005  T
Q  322 cctaccaatactgctagtattattaatgaatttgtgattgtttcactacatctagggaccgagacatacacaaagttgatgctccctcctggtgctgagg 421  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7328006 cctaccaatactgctagtattattaatgaatttgtgattgtttcactacatctagggaccgagacatacacaaagttgatgctccctcctggtgctgagg 7328105  T
Q  422 agtcgacacattcatcaaatgtttgtgtgttgatgaactccttatgcttttctcatgatttcaacaaaacaggattttgttatatgggaagatgacagaa 521  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||    
T  7328106 agtcgacacattcatcaaatgtttgtgtgttgatgaactccttatgcttttctcatgatttcaacaaaaca-gattttgttatat-ggaagatgacagaa 7328203  T
Q  522 tttggagatgacagggtcttggactaaattctttacatttagctaccacaaccttcaagtgaatttaaattcaagatttgtttactcgtggttgaaatta 621  Q
    ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7328204 tttggagatgaca-ggtcttggactaaattctttacatttagctatcacaaccttcaagtgaatttaaattcaagatttgtttactcgtggttgaaatta 7328302  T
Q  622 aaggcattgcatctttctgaagatggtgatacaaatcgtattcgcaagctgcctacataaccaagcaattctctataacttgagaactaatagactactg 721  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||    
T  7328303 aaggcattgcatctttctgaagatggtgatac-aatcgtattcgcaagctgcctgcataaccaagcaattctctataacttgagaactaatagagtactg 7328401  T
Q  722 gaaatctagagttaacaaaaagatatgttggtactctatcaaggattatgtcgaaagtctggtttcaacctgctgaatgtaagtttttctccaacataat 821  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  7328402 g-aatctagagttaacaaaaagatatgttggtactctatcaaggattatgtcgaaagtctggtttcaacctgctgaaagtaagtttttctccaacataat 7328500  T
Q  822 atttattttcaatttatgtacttagttttgccttcgtttcaaatgtgttgagtatttgcctttactttagaactttgtc 900  Q
    ||||| |||||||||||||||||||||||||||||||||   ||||| |||||||||| ||||||||||||||||||||    
T  7328501 attta-tttcaatttatgtacttagttttgccttcgttt---atgtg-tgagtatttg-ctttactttagaactttgtc 7328573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 339 - 844
Target Start/End: Complemental strand, 7311435 - 7310936
Alignment:
Q  339 tattattaatgaatttgtgattgtttcactacatctagggaccgagacatacacaaagttgatgctccctcctggtgctgaggagtcgacacattcatca 438  Q
    ||||||| |||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||  |||||||  |||||||||||| ||||    
T  7311435 tattatttatgaatttgtgattatttcactacatatagggactgagacatacacaaagttgatgctccctccaagtgctgacaagtcgacacatttatca 7311336  T
Q  439 aatgtttgtgtgttgatgaactccttatgcttttctcatgatttcaacaaaacaggattttgttatatgggaagatgacagaatttggagatgacagggt 538  Q
    | |||||||||||||||||||||||| ||||||||||| |||||||||  |||| ||||||||||||| |||||||||||||||||||||| |||  |||    
T  7311335 agtgtttgtgtgttgatgaactccttctgcttttctcaagatttcaacggaaca-gattttgttatat-ggaagatgacagaatttggagacgac-cggt 7311239  T
Q  539 cttggactaaattctttacatttagctaccacaaccttcaagtgaatttaaattcaagatttgtttactcgtggttgaaattaaaggcattgcatctttc 638  Q
    |||||||| | || |||||||||||||| ||||| |||| | ||||||||||||||||| ||||||||||| |||||||||||||| | |||||||||||    
T  7311238 cttggactcagttatttacatttagctatcacaatcttcgaatgaatttaaattcaagagttgtttactcgaggttgaaattaaagccgttgcatctttc 7311139  T
Q  639 tgaagatggtgatacaaatcgtattcgcaagctgcctacataaccaagcaattctctataacttgagaactaatagactactggaaatctagagttaaca 738  Q
    ||||||||||||||| ||| ||||||| |||||||||| |||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||    
T  7311138 tgaagatggtgatac-aatagtattcggaagctgcctagataaccaagcaattctgtataacttgagaactaatagagtact-gaaatctagagttaaca 7311041  T
Q  739 aaaagatatgttggtactctatcaaggattatgtcgaaagtctggtttcaacctgctgaatgtaagtttttctccaacataatatttattttcaatttat 838  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||  |||| |||||||||| || ||||||||||||| ||||| |||||    
T  7311040 aaaagatatgttggttctctatcaaggattatgtcgaaagtctggtttcaacctattgaaagtaagtttttttctaacataatattta-tttcagtttat 7310942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 165; E-Value: 9e-88
Query Start/End: Original strand, 622 - 898
Target Start/End: Complemental strand, 7306603 - 7306332
Alignment:
Q  622 aaggcattgcatctttctgaagatggtgatacaaatcgtattcgcaagctgcctacataaccaagcaattctctataacttgagaactaatagactactg 721  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||    
T  7306603 aaggcattgcatctttctgaagatggtgatacaa-tcgtattcgcaagctgcctagataaccaagcaattctgtataacttgagaactaatagagtactg 7306505  T
Q  722 gaaatctagagttaacaaaaagatatgttggtactctatcaaggattatgtcgaaagtctggtttcaacctgctgaatgtaagtttttctccaacataat 821  Q
     ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||  |||| ||| ||||||||||||||||||    
T  7306504 -aaatctagagtcaacaaaaagatatgttggttctctatcaaggattatgtcgaaagtctggtctcaacctattgaacgtaggtttttctccaacataat 7306406  T
Q  822 atttattttcaatttatgtacttagttttgccttcgtttcaaatgtgttgagtatttgcctttactttagaactttg 898  Q
    ||||| ||||||||||||||||| |||||  ||| ||||||| ||||  || ||||| ||||||||||| |||||||    
T  7306405 attta-tttcaatttatgtacttggtttttacttggtttcaattgtg-cgattattt-cctttactttaaaactttg 7306332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 8 - 323
Target Start/End: Complemental strand, 7311796 - 7311481
Alignment:
Q  8 tctggaaccccgccactagaaaaatatctgatagattaggttgtttcgatgatttcaattatgaatggaattcttggaggtttgtgttttgttatgataa 107  Q
    |||||||||||||||| || |||||||||||||| |||||| |||||||||||||| |||||| || ||||||||||||||| |||||||||||||||||    
T  7311796 tctggaaccccgccaccaggaaaatatctgataggttaggtagtttcgatgatttcgattatggatcgaattcttggaggttcgtgttttgttatgataa 7311697  T
Q  108 ttcaaccaacacttataaggttgtagccttgcattataatagcaattttagcaaccctaaggttgaggtgagcatttttactttgggtgataatgtttgg 207  Q
    ||||||  ||  |||||||||||| ||||||||||||||| | ||| | | || |||   |||||||||||||||||| |||||||||||||||||||||    
T  7311696 ttcaacggactattataaggttgtggccttgcattataatggaaatgtcaacagccccgtggttgaggtgagcattttcactttgggtgataatgtttgg 7311597  T
Q  208 agaactattcaaactttagctgttttgcctcttcagatagactttgcttattggagagtttacgagggtgtacaatttaattgcactgttaactggttgg 307  Q
    |||||||| ||||||||| || || ||||||||||| |   || |   ||||||||| | || || ||||||||||| || ||||| |||||||||||||    
T  7311596 agaactatacaaactttatcttttgtgcctcttcagcttctctatagctattggagaatgtatgatggtgtacaattcaactgcacggttaactggttgg 7311497  T
Q  308 cacgcaatcggattcc 323  Q
    ||||||||||||||||    
T  7311496 cacgcaatcggattcc 7311481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 8 - 107
Target Start/End: Complemental strand, 7306701 - 7306602
Alignment:
Q  8 tctggaaccccgccactagaaaaatatctgatagattaggttgtttcgatgatttcaattatgaatggaattcttggaggtttgtgttttgttatgataa 107  Q
    |||||||||||||||| || |||||||||||||||| ||| ||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||    
T  7306701 tctggaaccccgccaccaggaaaatatctgatagatcaggctgtttcgatgatttcaattataaatcgaattcttggaggttcgtgttttgttatgataa 7306602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 689 - 812
Target Start/End: Complemental strand, 35205780 - 35205658
Alignment:
Q  689 attctctataacttgagaactaatagactactggaaatctagagttaacaaaaagatatgttggtactctatcaaggattatgtcgaaagtctggtttca 788  Q
    ||||||||||||| |||||| |||||| ||||| ||||||  | ||||||| ||||||||||||| | |||||||||||||||||||||| |||||||||    
T  35205780 attctctataactggagaaccaatagagtactg-aaatcttcaattaacaataagatatgttggttcactatcaaggattatgtcgaaagcctggtttca 35205682  T
Q  789 acctgctgaatgtaagtttttctc 812  Q
    ||  | |||||||||||| |||||    
T  35205681 actagttgaatgtaagttgttctc 35205658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 10 - 219
Target Start/End: Original strand, 20456021 - 20456230
Alignment:
Q  10 tggaaccccgccactagaaaaatatctgatagattaggttgtttcgatgatttcaattatgaatggaattcttggaggtttgtgttttgttatgataatt 109  Q
    |||||||| ||||| || ||||| ||||||| |||||| | |||  |||||  |||||||  | |||| ||||||| |||||||||||||| ||||||||    
T  20456021 tggaaccctgccaccaggaaaatttctgataaattaggatatttgcatgatgacaattatagacggaactcttggatgtttgtgttttgttttgataatt 20456120  T
Q  110 caaccaacacttataaggttgtagccttgcattataatagcaatttt-agcaaccctaaggttgaggtgagcatttttactttgggtgataatgtttgga 208  Q
    ||||| |||| ||||||||||| |||||| ||| | | ||   |||| |  || ||| ||||| |  |||||||||||| ||||||||||||||||||||    
T  20456121 caaccgacacatataaggttgtggccttgaattgtga-agatgttttcaaaaaacctgaggttaaaatgagcatttttagtttgggtgataatgtttgga 20456219  T
Q  209 gaactattcaa 219  Q
    ||| |||||||    
T  20456220 gaagtattcaa 20456230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 443 - 572
Target Start/End: Complemental strand, 35206045 - 35205919
Alignment:
Q  443 tttgtgtgttgatgaactccttatgcttttctcatgatttcaacaaaacaggattttgttatatgggaagatgacagaatttggagatgacagggtcttg 542  Q
    |||||||| ||| ||||||||| || |||| ||||||||||||   |||  ||||||||||||| |||||||||||||||||||| ||||||  ||||||    
T  35206045 tttgtgtgctgaggaactccttttgtttttatcatgatttcaatggaac-tgattttgttatat-ggaagatgacagaatttggaaatgaca-agtcttg 35205949  T
Q  543 gactaaattctttacatttagctaccacaa 572  Q
    |||| ||||| ||| ||||||||| |||||    
T  35205948 gactcaattccttaaatttagctatcacaa 35205919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 10 - 126
Target Start/End: Original strand, 20414392 - 20414508
Alignment:
Q  10 tggaaccccgccactagaaaaatatctgatagattaggttgtttcgatgatttcaattatgaatggaattcttggaggtttgtgttttgttatgataatt 109  Q
    |||||||| ||||| |||||||| ||||||| |||||| | |||  ||| |  |||||||  | |||| ||||||| |||||||||| |||||||| |||    
T  20414392 tggaacccggccaccagaaaaatttctgataaattaggatatttgcatgctgacaattatagacggaactcttggatgtttgtgtttggttatgatgatt 20414491  T
Q  110 caaccaacacttataag 126  Q
    |||||||||||||||||    
T  20414492 caaccaacacttataag 20414508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 626 - 790
Target Start/End: Original strand, 20414999 - 20415161
Alignment:
Q  626 cattgcatctttctgaagatggtgatacaaatcgtattcgcaagctgcctacataaccaagcaattctctataacttgagaactaatagactactggaaa 725  Q
    ||||||||||||   || |||||||||||  | |||||||||| | |||||||  ||| ||||||||||||||| | ||||| ||||| | || || |||    
T  20414999 cattgcatcttttcaaaaatggtgatacactt-gtattcgcaaacagcctacaagaccgagcaattctctataattggagaaataatatagtattg-aaa 20415096  T
Q  726 tctagagttaacaaaaagatatgttggtactctatcaaggattatgtcgaaagtctggtttcaac 790  Q
     | ||||||||||| || | |||||||| |||||||||   |||||| |||||||||||||||||    
T  20415097 cccagagttaacaataacaaatgttggttctctatcaactgttatgttgaaagtctggtttcaac 20415161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 447 - 572
Target Start/End: Complemental strand, 21210598 - 21210476
Alignment:
Q  447 tgtgttgatgaactccttatgcttttctcatgatttcaacaaaacaggattttgttatatgggaagatgacagaatttggagatgacagggtcttggact 546  Q
    |||||| | ||||| ||||||| ||| |||||||||||||  |||  ||||||||||||| ||||||||||| | |||||||||||||  ||||||||||    
T  21210598 tgtgtttaggaacttcttatgcctttatcatgatttcaacggaac-tgattttgttatat-ggaagatgacaaagtttggagatgaca-agtcttggact 21210502  T
Q  547 aaattctttacatttagctaccacaa 572  Q
      |||| ||| ||||||||| |||||    
T  21210501 ctattccttaaatttagctatcacaa 21210476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 81 - 130
Target Start/End: Complemental strand, 21210895 - 21210846
Alignment:
Q  81 ttggaggtttgtgttttgttatgataattcaaccaacacttataaggttg 130  Q
    ||||| ||||||||||||||||||||||| |||| |||||||||||||||    
T  21210895 ttggaagtttgtgttttgttatgataatttaaccgacacttataaggttg 21210846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 613 - 789
Target Start/End: Complemental strand, 21210420 - 21210247
Alignment:
Q  613 ttgaaattaaaggcattgcatctttctgaagatggtgatacaaatcgtattcgcaagctgcctacataaccaagcaattctctataacttgagaactaat 712  Q
    |||||||||||| |  |||||||||||||| ||  |||||| ||| ||||||| || |  ||| || ||||||||| |||| |||||||| |||| ||||    
T  21210420 ttgaaattaaagccggtgcatctttctgaaaatattgatac-aatagtattcgtaaacaacctgcaaaaccaagcagttctatataacttcagaaataat 21210322  T
Q  713 agactactggaaatctagagttaacaaaaagatatgttggtactctatcaaggattatgtcgaaagtctggtttcaa 789  Q
    | | |||| |||||| | | ||||| | |||||| |||||| || || | |||||||||||| ||||||||||||||    
T  21210321 acagtact-gaaatccaaaattaaccataagatacgttggttctgtaccgaggattatgtcg-aagtctggtttcaa 21210247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 441 - 567
Target Start/End: Complemental strand, 21218831 - 21218708
Alignment:
Q  441 tgtttgtgtgttgatgaactccttatgcttttctcatgatttcaacaaaacaggattttgttatatgggaagatgacagaatttggagatgacagggtct 540  Q
    |||||||||||||||||||||||| || |||| ||| ||||||||   |||  ||||| ||||||||| || ||||| |||||||||||||| |  ||||    
T  21218831 tgtttgtgtgttgatgaactccttttgtttttatcacgatttcaatggaac-tgatttggttatatggcaa-atgacggaatttggagatgata-agtct 21218735  T
Q  541 tggactaaattctttacatttagctac 567  Q
    |||||| ||||| | | ||||||||||    
T  21218734 tggactcaattcctcaaatttagctac 21218708  T

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Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 137
Target Start/End: Complemental strand, 22525630 - 22525580
Alignment:
Q  87 gtttgtgttttgttatgataattcaaccaacacttataaggttgtagcctt 137  Q
    |||||||||| ||||||||||||||||| |||| ||||| |||||||||||    
T  22525630 gtttgtgtttggttatgataattcaaccgacacctataaagttgtagcctt 22525580  T

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Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 137
Target Start/End: Original strand, 22534240 - 22534286
Alignment:
Q  91 gtgttttgttatgataattcaaccaacacttataaggttgtagcctt 137  Q
    |||||| ||||||||||||||||| |||| |||||||||||||||||    
T  22534240 gtgtttggttatgataattcaaccgacacctataaggttgtagcctt 22534286  T

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Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 225
Target Start/End: Original strand, 20414570 - 20414619
Alignment:
Q  176 tgagcatttttactttgggtgataatgtttggagaactattcaaacttta 225  Q
    |||||||||||| ||||||||||||||||||||||| |||| ||| ||||    
T  20414570 tgagcatttttagtttgggtgataatgtttggagaagtattaaaagttta 20414619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 354 - 410
Target Start/End: Original strand, 20456359 - 20456415
Alignment:
Q  354 tgtgattgtttcactacatctagggaccgagacatacacaaagttgatgctccctcc 410  Q
    |||||||||||| ||  ||||||| || |||||||||||||||||||||| ||||||    
T  20456359 tgtgattgtttcccttgatctaggtactgagacatacacaaagttgatgccccctcc 20456415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 219
Target Start/End: Complemental strand, 21210803 - 21210756
Alignment:
Q  172 gaggtgagcatttttactttgggtgataatgtttggagaactattcaa 219  Q
    |||||||||||||||| ||| ||||||||| |||||| ||||||||||    
T  21210803 gaggtgagcatttttagtttaggtgataatatttggaaaactattcaa 21210756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 722 - 811
Target Start/End: Complemental strand, 21218558 - 21218469
Alignment:
Q  722 gaaatctagagttaacaaaaagatatgttggtactctatcaaggattatgtcgaaagtctggtttcaacctgctgaatgtaagtttttct 811  Q
    |||| ||||| |||||||||||||| |||||| |||  || | ||||||||||||||  |||||||||| |  |||| ||||||| ||||    
T  21218558 gaaagctagaattaacaaaaagataagttggtcctcagtctatgattatgtcgaaagcttggtttcaacttcttgaaagtaagttcttct 21218469  T

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Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 224
Target Start/End: Complemental strand, 22525544 - 22525511
Alignment:
Q  191 tgggtgataatgtttggagaactattcaaacttt 224  Q
    |||||||||||||||||||||||||| |||||||    
T  22525544 tgggtgataatgtttggagaactattaaaacttt 22525511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 350 - 403
Target Start/End: Original strand, 36260106 - 36260159
Alignment:
Q  350 aatttgtgattgtttcactacatctagggaccgagacatacacaaagttgatgc 403  Q
    |||||||||||||||||||  |||| |  || ||||||||||||||||||||||    
T  36260106 aatttgtgattgtttcacttgatctggaaacagagacatacacaaagttgatgc 36260159  T

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Target: chr1 (Bit Score: 51; Significance: 9e-20; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 686 - 812
Target Start/End: Complemental strand, 31442874 - 31442749
Alignment:
Q  686 gcaattctctataacttgagaactaatagactactggaaatctagagttaacaaaaagatatgttggtactctatcaaggattatgtcgaaagtctggtt 785  Q
    |||||||||||||| | ||||| ||||||| || || ||| ||||||||||||||||||||||||||| |||||| ||  |||||||||||||  |||||    
T  31442874 gcaattctctataattggagaaataatagagtagtgaaaa-ctagagttaacaaaaagatatgttggttctctataaaccattatgtcgaaagcttggtt 31442776  T
Q  786 tcaacctgctgaatgtaagtttttctc 812  Q
    |||||  | |||| ||||||| |||||    
T  31442775 tcaacaagttgaaagtaagttcttctc 31442749  T

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Target: scaffold0064 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 130
Target Start/End: Original strand, 23807 - 23855
Alignment:
Q  82 tggaggtttgtgttttgttatgataattcaaccaacacttataaggttg 130  Q
    |||| |||||||||| ||||||| |||| ||||||||||||||||||||    
T  23807 tggaagtttgtgtttggttatgagaatttaaccaacacttataaggttg 23855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 680 - 812
Target Start/End: Original strand, 24360 - 24491
Alignment:
Q  680 aaccaagcaattctctataacttgagaactaatagactactggaaatctagagttaacaaaaagatatgttggtactctatcaaggattatgtcgaaagt 779  Q
    |||| ||||||||||||||| | || || ||||||| || || ||| |||| ||||||||||||||||||||||  ||||| ||  ||||||| |||||     
T  24360 aaccgagcaattctctataattggataaataatagagtagtgaaaa-ctagggttaacaaaaagatatgttggtgatctataaacaattatgttgaaagc 24458  T
Q  780 ctggtttcaacctgctgaatgtaagtttttctc 812  Q
     ||||| |||| || |||  ||||||| |||||    
T  24459 atggttccaacttgttgagagtaagttcttctc 24491  T

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Target: scaffold0128 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 47
Target Start/End: Original strand, 3666 - 3705
Alignment:
Q  8 tctggaaccccgccactagaaaaatatctgatagattagg 47  Q
    |||||||||||||||| |||||||||||||||| ||||||    
T  3666 tctggaaccccgccaccagaaaaatatctgataaattagg 3705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 138
Target Start/End: Original strand, 2910627 - 2910674
Alignment:
Q  91 gtgttttgttatgataattcaaccaacacttataaggttgtagccttg 138  Q
    |||||| ||||||||||||||||  |||||||||||||||| ||||||    
T  2910627 gtgtttggttatgataattcaactcacacttataaggttgtggccttg 2910674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 733 - 811
Target Start/End: Original strand, 42298342 - 42298420
Alignment:
Q  733 ttaacaaaaagatatgttggtactctatcaaggattatgtcgaaagtctggtttcaacctgctgaatgtaagtttttct 811  Q
    |||||| |||||||||||||| ||| || || ||||||||||||||  |||||||||| |  |||| ||||||| ||||    
T  42298342 ttaacagaaagatatgttggtcctcaatgaaagattatgtcgaaagcttggtttcaacttcttgaaagtaagttcttct 42298420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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