View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4836-Insertion-3 (Length: 875)
Name: NF4836-Insertion-3
Description: NF4836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4836-Insertion-3 |
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| [»] chr8 (7 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 624; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 624; E-Value: 0
Query Start/End: Original strand, 140 - 875
Target Start/End: Original strand, 27982854 - 27983572
Alignment:
| Q |
140 |
cagctttaactgtttggaacaaaattaaaacctttaccacaattatttcgaccgcagcatcatgatttcaatttatctgcaacacaactttaatcaagaa |
239 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
27982854 |
cagctttaactgtttggaacaaaattaaaacctttaccacaattatttcgaccgcagcatcatgatttcaagttatctgcaacacaactttaatcaagaa |
27982953 |
T |
|
| Q |
240 |
tgtatttagtgaacgcttttggatccacgttggatttttatgaaattgcattgaaatagcacggctgcacagaagcctaacattgtagctttgtaatatt |
339 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
27982954 |
tgtatttagtgaacgcttttggatccacgttggatttttatgaaattgca-----------cggctgcacagaagcctaacattgtagctttgtaatatt |
27983042 |
T |
|
| Q |
340 |
cacgttcaacatacatccgaacgcaagatttgatgtgtcaactcagatccacatatacaattaaccatagaactttcaatgtcaaagattttaatgaaca |
439 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||| |
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| T |
27983043 |
cacgttcaacatacatccgaacgcaagatttgatgtgtcaactcagatcaacatatacaatcaaccatagaactttcaatgtcaaggattttaatgaaca |
27983142 |
T |
|
| Q |
440 |
aaaactgaaatttaaaccattgaccataactacattccacggagtatttaccgctatgactttcattagtatgtatgggaatcatattcatctacacaaa |
539 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
27983143 |
aacactgaaatttaaaccattgaccataactacattccacggagt---taccgctatgactttcattagtctgtatgggaatcatattcatctacacaaa |
27983239 |
T |
|
| Q |
540 |
caatttttctgtaacagggaaaaggagatactattgaacaatttttacatgatggggaaccttaaaactaaccaaattctctcactccattaactgaact |
639 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
27983240 |
caatttttctgtaacagggaaaaggagatactattgaacaatttttacatgatggggaaccttaaaactaaccaaattctctcactccactaactgaact |
27983339 |
T |
|
| Q |
640 |
tctgttgaacatgacactagctcttgatcaaggtgaaacgtcttgcattccggaatcacattcttcatctatgtcactcacacagttatcataatttgca |
739 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
27983340 |
tctgttgaacatgacactagctcttgatcaaggtgaaacgtcttgcattccggaatcacattcttcatccatgtcactcacacagttatcataatttgca |
27983439 |
T |
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| Q |
740 |
tcgggttgagtcattatcatccttttctccattattatcacaatcaaaaccatatttgttgtgtaaatattttgattttgggagctgtctcttcattttc |
839 |
Q |
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| T |
27983440 |
tc-ggttgagtcattatcatccttttctccattattatcacaatcaaaaccatatttgttgtgtaaatattttgatttt-ggagctgtctcttcattttc |
27983537 |
T |
|
| Q |
840 |
cacaatactagagaaaccagggcgtaccttgttggg |
875 |
Q |
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||||||||||||| |||||||| ||||||||||||| |
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| T |
27983538 |
cacaatactagag-aaccagggtgtaccttgttggg |
27983572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 624; E-Value: 0
Query Start/End: Original strand, 140 - 875
Target Start/End: Original strand, 28040156 - 28040874
Alignment:
| Q |
140 |
cagctttaactgtttggaacaaaattaaaacctttaccacaattatttcgaccgcagcatcatgatttcaatttatctgcaacacaactttaatcaagaa |
239 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
28040156 |
cagctttaactgtttggaacaaaattaaaacctttaccacaattatttcgaccgcagcatcatgatttcaagttatctgcaacacaactttaatcaagaa |
28040255 |
T |
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| Q |
240 |
tgtatttagtgaacgcttttggatccacgttggatttttatgaaattgcattgaaatagcacggctgcacagaagcctaacattgtagctttgtaatatt |
339 |
Q |
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| T |
28040256 |
tgtatttagtgaacgcttttggatccacgttggatttttatgaaattgca-----------cggctgcacagaagcctaacattgtagctttgtaatatt |
28040344 |
T |
|
| Q |
340 |
cacgttcaacatacatccgaacgcaagatttgatgtgtcaactcagatccacatatacaattaaccatagaactttcaatgtcaaagattttaatgaaca |
439 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||| |
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| T |
28040345 |
cacgttcaacatacatccgaacgcaagatttgatgtgtcaactcagatcaacatatacaatcaaccatagaactttcaatgtcaaggattttaatgaaca |
28040444 |
T |
|
| Q |
440 |
aaaactgaaatttaaaccattgaccataactacattccacggagtatttaccgctatgactttcattagtatgtatgggaatcatattcatctacacaaa |
539 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
28040445 |
aacactgaaatttaaaccattgaccataactacattccacggagt---taccgctatgactttcattagtctgtatgggaatcatattcatctacacaaa |
28040541 |
T |
|
| Q |
540 |
caatttttctgtaacagggaaaaggagatactattgaacaatttttacatgatggggaaccttaaaactaaccaaattctctcactccattaactgaact |
639 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
28040542 |
caatttttctgtaacagggaaaaggagatactattgaacaatttttacatgatggggaaccttaaaactaaccaaattctctcactccactaactgaact |
28040641 |
T |
|
| Q |
640 |
tctgttgaacatgacactagctcttgatcaaggtgaaacgtcttgcattccggaatcacattcttcatctatgtcactcacacagttatcataatttgca |
739 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
28040642 |
tctgttgaacatgacactagctcttgatcaaggtgaaacgtcttgcattccggaatcacattcttcatccatgtcactcacacagttatcataatttgca |
28040741 |
T |
|
| Q |
740 |
tcgggttgagtcattatcatccttttctccattattatcacaatcaaaaccatatttgttgtgtaaatattttgattttgggagctgtctcttcattttc |
839 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
28040742 |
tc-ggttgagtcattatcatccttttctccattattatcacaatcaaaaccatatttgttgtgtaaatattttgatttt-ggagctgtctcttcattttc |
28040839 |
T |
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| Q |
840 |
cacaatactagagaaaccagggcgtaccttgttggg |
875 |
Q |
| |
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||||||||||||| |||||||| ||||||||||||| |
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| T |
28040840 |
cacaatactagag-aaccagggtgtaccttgttggg |
28040874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 465 - 594
Target Start/End: Original strand, 27237907 - 27238037
Alignment:
| Q |
465 |
ataactacattccacggagtattt-accgctatgactttcattagtatgtatgggaatcatattcatctacacaaacaatttttctgtaacagggaaaag |
563 |
Q |
| |
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|||||||||||||||||||||||| ||| |||| |||| ||||||| ||||||||||||||||||||||| |||| ||| ||||||||||| ||||||| |
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| T |
27237907 |
ataactacattccacggagtattttaccactataacttccattagtctgtatgggaatcatattcatctatacaatcaagttttctgtaacctggaaaag |
27238006 |
T |
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| Q |
564 |
gagatactattgaacaatttttacatgatgg |
594 |
Q |
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|||||||||| | ||||||||||||||||| |
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| T |
27238007 |
cagatactattcagcaatttttacatgatgg |
27238037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 8 - 78
Target Start/End: Original strand, 27982739 - 27982808
Alignment:
| Q |
8 |
cttttttaaacacttaccacacaaaaaatgttggaaagataatatattgctatcccttttcttatttaaaa |
78 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
27982739 |
cttttttaaacacttaccaca-aaaaaatgttggaaagataatatattgctatcccttttcttatctaaaa |
27982808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 8 - 78
Target Start/End: Original strand, 28040041 - 28040110
Alignment:
| Q |
8 |
cttttttaaacacttaccacacaaaaaatgttggaaagataatatattgctatcccttttcttatttaaaa |
78 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
28040041 |
cttttttaaacacttaccaca-aaaaaatgttggaaagataatatattgctatcccttttcttatctaaaa |
28040110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 365 - 408
Target Start/End: Original strand, 27862446 - 27862489
Alignment:
| Q |
365 |
agatttgatgtgtcaactcagatccacatatacaattaaccata |
408 |
Q |
| |
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|||||||||||||||||||||||||| ||||| |||||||||| |
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| T |
27862446 |
agatttgatgtgtcaactcagatccatatatatcattaaccata |
27862489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 182
Target Start/End: Original strand, 27861977 - 27862006
Alignment:
| Q |
153 |
ttggaacaaaattaaaacctttaccacaat |
182 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
27861977 |
ttggaacaaaattaaaacctttaccacaat |
27862006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 533 - 613
Target Start/End: Original strand, 46267452 - 46267530
Alignment:
| Q |
533 |
acacaaacaatttttctgtaacagggaaaaggagatactattgaacaatttttacatgatggggaaccttaaaactaacca |
613 |
Q |
| |
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|||||||||||||||||||| |||| ||| |||||| ||| |||| ||||||||||| |||||||||||||||| |||| |
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| T |
46267452 |
acacaaacaatttttctgtactaggg-aaacgagataatatgcaacactttttacatga-ggggaaccttaaaactgacca |
46267530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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