View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4836-Insertion-8 (Length: 522)
Name: NF4836-Insertion-8
Description: NF4836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4836-Insertion-8 |
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Alignment Details
Target: chr3 (Bit Score: 482; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 14 - 519
Target Start/End: Original strand, 43533877 - 43534382
Alignment:
| Q |
14 |
tcatatctttatcttttttaaaatatatatgcaaataaggtacaacaatcccttatcaaggatcgacttaagctcgcaatgacattacacgctttattta |
113 |
Q |
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| T |
43533877 |
tcatatctttatattttttaaaatatatatgcaaataaggtacaacaatcccttatcaaggatcgacttaagctcgcaatgacattacacgctttattta |
43533976 |
T |
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| Q |
114 |
gtttgctatgagatttgtcaccaagataatcactcaagaataactaccctcttatcatcttgttcaacaaattatatatccatagtagttattgactaag |
213 |
Q |
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| T |
43533977 |
gtttgctatgagatttgtcaccaagataatcactcaagaataactaccctcttatcatcttgttccacaaattatatatccatagtagttattgactaag |
43534076 |
T |
|
| Q |
214 |
atacttgttgaaagtactaatcaagcttgacctttgttcctaaattttcagtatcaatgggtattgtcaccttatatatctctgcaagagagcgatactt |
313 |
Q |
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| T |
43534077 |
atacttgttgaaagtactaatcaagtttgacctttgttcctaaattttcagtatcaatgggtattgtcaccttatatatctctgcaagagagcgatactt |
43534176 |
T |
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| Q |
314 |
cttcgccttctttggtttaaaaatcttactgctcatattattattaggtttttgatcaacctcttcacttgagattcttttctccctcctcttcctaaca |
413 |
Q |
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| T |
43534177 |
cttcgccttctttggtttaaaaatcttattgctcatattattattaggtttttgatcaacctcttcacttgagattcttttctccctcctcttcctaaca |
43534276 |
T |
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| Q |
414 |
atattgttgttttcaccgttgagctgcatgagcgcttcagccgcaaccacaatgtcatcaaacatatcagcattcttttttgtttcagttttcactttac |
513 |
Q |
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| T |
43534277 |
atattgttgttttcacagttgagctgcatgagcgcttcggccgcaaccacaatgtcatcaaacatatcagcattcttttttgtttcagttttcactttac |
43534376 |
T |
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| Q |
514 |
catctg |
519 |
Q |
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|||||| |
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| T |
43534377 |
catctg |
43534382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 95 - 369
Target Start/End: Original strand, 43531668 - 43531936
Alignment:
| Q |
95 |
acattacacgctttatttagtttgctatgagatttgtcaccaagataatcactcaagaataactaccctcttatcatcttgttcaacaaattatatatcc |
194 |
Q |
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| T |
43531668 |
acattacacactttatttagttcactatgtgatttgtccccaagataatcacttgagaataattaccctcttctcatctggttcaacaaattatatatcc |
43531767 |
T |
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| Q |
195 |
atagtagttattgactaagatacttgttgaaagtactaatcaagcttgacctttgttcctaaattttcagtatcaatgggtattgtcaccttatatatct |
294 |
Q |
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| T |
43531768 |
atagt---tattgactaagatacatgttgaaagtactaatcaagcttaacctttgttcctaaattttcagtatcaatgggta---tcaccttatatgtat |
43531861 |
T |
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| Q |
295 |
ctgcaagagagcgatacttcttcgccttctttggtttaaaaatcttactgctcatattattattaggtttttgat |
369 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||| | |||||||| |
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| T |
43531862 |
ttgcaagagagcgatacttctttgccttctttggtttaaaaatcttattgctcttattattattggatttttgat |
43531936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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