View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4836-Insertion-9 (Length: 358)

Name: NF4836-Insertion-9
Description: NF4836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4836-Insertion-9
NF4836-Insertion-9
[»] chr5 (3 HSPs)
chr5 (8-358)||(14066874-14067243)
chr5 (142-184)||(24092620-24092662)
chr5 (150-186)||(38045335-38045371)
[»] chr2 (5 HSPs)
chr2 (137-187)||(11759797-11759847)
chr2 (137-201)||(6948480-6948544)
chr2 (150-183)||(3853963-3853996)
chr2 (150-183)||(8170375-8170408)
chr2 (151-183)||(25747894-25747926)
[»] chr8 (3 HSPs)
chr8 (148-183)||(33588780-33588815)
chr8 (137-183)||(36779440-36779486)
chr8 (150-186)||(10552920-10552956)
[»] chr3 (5 HSPs)
chr3 (148-183)||(25181262-25181297)
chr3 (147-184)||(2300537-2300574)
chr3 (150-183)||(48189456-48189489)
chr3 (159-191)||(32523268-32523300)
chr3 (137-185)||(53567973-53568021)
[»] chr7 (3 HSPs)
chr7 (150-183)||(32187015-32187048)
chr7 (150-183)||(41715732-41715765)
chr7 (137-185)||(41625512-41625560)
[»] chr6 (1 HSPs)
chr6 (148-185)||(25208734-25208771)
[»] chr4 (2 HSPs)
chr4 (150-183)||(36150643-36150676)
chr4 (150-183)||(48550256-48550289)
[»] chr1 (2 HSPs)
chr1 (150-183)||(10470667-10470700)
chr1 (150-183)||(27801667-27801700)


Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 8 - 358
Target Start/End: Complemental strand, 14067243 - 14066874
Alignment:
Q  8 tatagagagtttaaaagtggaactaaacacaggcctagaatttttacctaagaccatgactagtaatctataactatcatcg---------------tgc 92  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  ||                |||    
T  14067243 tatagagagtttaaaagtggaactaaacacaggcttagaatttttacctaagaccatgactagtaatctataactatagtctatgtttggtttagcttgc 14067144  T
Q  93 agcggctaaatgcacgatgatagggcattctaccatgaaagcaaaaacacaaactattttacatttaactcacttttaatcaaaatcaattttacctaac 192  Q
    |||||||||||||||  ||||||||||||||| || |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  14067143 agcggctaaatgcacagtgatagggcattctatcaagaaagcaaaaaca--aactattttacatttaactcacttttaatcaaaatcaattttacctaac 14067046  T
Q  193 catttcattnnnnnnnnn------tcattacttcagagccgaacacacacactcttttcgaaccagcaagttgacccttttctccatccattatcataaa 286  Q
    |||||||||               ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  14067045 catttcattaaaaaaaaaaaaaaatcattacttcagagccgaacacacacactcttttcgaaccaacaagttgacccttttctccatccattatcataaa 14066946  T
Q  287 ttataaaatgctttattggtgaaataatgaaggttaaacttgacttagaggttgatgttaaattgcaattga 358  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14066945 ttataaaatgctttattggtgaaataatgaaggttaaacttgacttagaggttgatgttaaattgcaattga 14066874  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 184
Target Start/End: Complemental strand, 24092662 - 24092620
Alignment:
Q  142 caaactattttacatttaactcacttttaatcaaaatcaattt 184  Q
    ||||||| ||||||||||||||| |||||| ||||||||||||    
T  24092662 caaactactttacatttaactcatttttaaccaaaatcaattt 24092620  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 186
Target Start/End: Original strand, 38045335 - 38045371
Alignment:
Q  150 tttacatttaactcacttttaatcaaaatcaatttta 186  Q
    ||||||||||||||||||||||  |||||||||||||    
T  38045335 tttacatttaactcacttttaactaaaatcaatttta 38045371  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 187
Target Start/End: Complemental strand, 11759847 - 11759797
Alignment:
Q  137 aaacacaaactattttacatttaactcacttttaatcaaaatcaattttac 187  Q
    |||||||||| | ||||| || |||||||||||||||||||||||||||||    
T  11759847 aaacacaaaccaatttaccttcaactcacttttaatcaaaatcaattttac 11759797  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 201
Target Start/End: Complemental strand, 6948544 - 6948480
Alignment:
Q  137 aaacacaaactattttacatttaactcacttttaatcaaaatcaattttacctaaccatttcatt 201  Q
    ||||| ||| |||||||| || |||||| ||| |||||||||||||||||| |||||| ||||||    
T  6948544 aaacaaaaattattttaccttcaactcaatttcaatcaaaatcaattttacataaccaattcatt 6948480  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 183
Target Start/End: Original strand, 3853963 - 3853996
Alignment:
Q  150 tttacatttaactcacttttaatcaaaatcaatt 183  Q
    |||||||| |||||||||||||||||||||||||    
T  3853963 tttacattcaactcacttttaatcaaaatcaatt 3853996  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 183
Target Start/End: Original strand, 8170375 - 8170408
Alignment:
Q  150 tttacatttaactcacttttaatcaaaatcaatt 183  Q
    |||||||| |||||||||||||||||||||||||    
T  8170375 tttacattcaactcacttttaatcaaaatcaatt 8170408  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 151 - 183
Target Start/End: Complemental strand, 25747926 - 25747894
Alignment:
Q  151 ttacatttaactcacttttaatcaaaatcaatt 183  Q
    ||||||| |||||||||||||||||||||||||    
T  25747926 ttacattcaactcacttttaatcaaaatcaatt 25747894  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 148 - 183
Target Start/End: Original strand, 33588780 - 33588815
Alignment:
Q  148 attttacatttaactcacttttaatcaaaatcaatt 183  Q
    |||||||||| |||||||||||||||||||||||||    
T  33588780 attttacattaaactcacttttaatcaaaatcaatt 33588815  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 183
Target Start/End: Original strand, 36779440 - 36779486
Alignment:
Q  137 aaacacaaactattttacatttaactcacttttaatcaaaatcaatt 183  Q
    ||||| ||| || |||||||| |||||||||||||||||||||||||    
T  36779440 aaacataaattactttacattcaactcacttttaatcaaaatcaatt 36779486  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 186
Target Start/End: Complemental strand, 10552956 - 10552920
Alignment:
Q  150 tttacatttaactcacttttaatcaaaatcaatttta 186  Q
    |||||||| ||||||||||||| ||||||||||||||    
T  10552956 tttacattcaactcacttttaaccaaaatcaatttta 10552920  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 148 - 183
Target Start/End: Original strand, 25181262 - 25181297
Alignment:
Q  148 attttacatttaactcacttttaatcaaaatcaatt 183  Q
    |||||||||| |||||||||||||||||||||||||    
T  25181262 attttacattaaactcacttttaatcaaaatcaatt 25181297  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 184
Target Start/End: Complemental strand, 2300574 - 2300537
Alignment:
Q  147 tattttacatttaactcacttttaatcaaaatcaattt 184  Q
    |||||||||||||||||||||||||| || ||||||||    
T  2300574 tattttacatttaactcacttttaattaacatcaattt 2300537  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 183
Target Start/End: Complemental strand, 48189489 - 48189456
Alignment:
Q  150 tttacatttaactcacttttaatcaaaatcaatt 183  Q
    |||||||| |||||||||||||||||||||||||    
T  48189489 tttacattcaactcacttttaatcaaaatcaatt 48189456  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 191
Target Start/End: Complemental strand, 32523300 - 32523268
Alignment:
Q  159 aactcacttttaatcaaaatcaattttacctaa 191  Q
    |||| ||||||||||||||||||||||||||||    
T  32523300 aactaacttttaatcaaaatcaattttacctaa 32523268  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 137 - 185
Target Start/End: Original strand, 53567973 - 53568021
Alignment:
Q  137 aaacacaaactattttacatttaactcacttttaatcaaaatcaatttt 185  Q
    ||||| ||| || ||| |||| |||||||||||||||||||||||||||    
T  53567973 aaacataaattacttttcattcaactcacttttaatcaaaatcaatttt 53568021  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 183
Target Start/End: Original strand, 32187015 - 32187048
Alignment:
Q  150 tttacatttaactcacttttaatcaaaatcaatt 183  Q
    ||||||| ||||||||||||||||||||||||||    
T  32187015 tttacatctaactcacttttaatcaaaatcaatt 32187048  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 183
Target Start/End: Original strand, 41715732 - 41715765
Alignment:
Q  150 tttacatttaactcacttttaatcaaaatcaatt 183  Q
    ||||||| ||||||||||||||||||||||||||    
T  41715732 tttacatctaactcacttttaatcaaaatcaatt 41715765  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 137 - 185
Target Start/End: Complemental strand, 41625560 - 41625512
Alignment:
Q  137 aaacacaaactattttacatttaactcacttttaatcaaaatcaatttt 185  Q
    ||||||||| || |||||| | || ||||||||||||||||||||||||    
T  41625560 aaacacaaattaatttacactcaagtcacttttaatcaaaatcaatttt 41625512  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 185
Target Start/End: Original strand, 25208734 - 25208771
Alignment:
Q  148 attttacatttaactcacttttaatcaaaatcaatttt 185  Q
    |||||||||| |||||||||||||| ||||||||||||    
T  25208734 attttacattcaactcacttttaattaaaatcaatttt 25208771  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 183
Target Start/End: Original strand, 36150643 - 36150676
Alignment:
Q  150 tttacatttaactcacttttaatcaaaatcaatt 183  Q
    |||||||| |||||||||||||||||||||||||    
T  36150643 tttacattcaactcacttttaatcaaaatcaatt 36150676  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 183
Target Start/End: Original strand, 48550256 - 48550289
Alignment:
Q  150 tttacatttaactcacttttaatcaaaatcaatt 183  Q
    ||||||| ||||||||||||||||||||||||||    
T  48550256 tttacatctaactcacttttaatcaaaatcaatt 48550289  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 183
Target Start/End: Original strand, 10470667 - 10470700
Alignment:
Q  150 tttacatttaactcacttttaatcaaaatcaatt 183  Q
    |||||||| |||||||||||||||||||||||||    
T  10470667 tttacattcaactcacttttaatcaaaatcaatt 10470700  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 183
Target Start/End: Complemental strand, 27801700 - 27801667
Alignment:
Q  150 tttacatttaactcacttttaatcaaaatcaatt 183  Q
    ||||||| ||||||||||||||||||||||||||    
T  27801700 tttacatctaactcacttttaatcaaaatcaatt 27801667  T

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