View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4836_high_10 (Length: 307)
Name: NF4836_high_10
Description: NF4836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4836_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 12 - 253
Target Start/End: Original strand, 18868009 - 18868250
Alignment:
| Q |
12 |
cacagaagaaggagtcacaaatctggaaagcgcagaggaaacgtttcctctgcgcttacagagttgcctttgaaaagggttagcaatgcaggaaaccgcg |
111 |
Q |
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| T |
18868009 |
cacaaaagaaggagtcacaaatctggaaagcgcagaggaaacgtttcctctgcgcttacagagttgcctttgaaaagggttagcaatgcaggaaaccgcg |
18868108 |
T |
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| Q |
112 |
tgggagattttaatctcagtgaatttgttcacctggattttgacaaaggtggttcggccgcatgtaggagatcagaggtttcaaatgtcaagtttcatct |
211 |
Q |
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| T |
18868109 |
tgggagattttaatctcagtgaatttgttcacctggattttgacaaaggtggttcggctgcctgtaggagatcagaggtttcaaatgtcaagtttcatct |
18868208 |
T |
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| Q |
212 |
tacccaggttcaataccatagtcaaatagatgccaatggtaa |
253 |
Q |
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| T |
18868209 |
tacccaggttcaataccacagtcaaatagatgccaatggtaa |
18868250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 68
Target Start/End: Complemental strand, 18868065 - 18868036
Alignment:
| Q |
39 |
aagcgcagaggaaacgtttcctctgcgctt |
68 |
Q |
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| T |
18868065 |
aagcgcagaggaaacgtttcctctgcgctt |
18868036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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