View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4836_high_11 (Length: 306)

Name: NF4836_high_11
Description: NF4836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4836_high_11
NF4836_high_11
[»] chr4 (1 HSPs)
chr4 (9-306)||(7254055-7254352)


Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 9 - 306
Target Start/End: Complemental strand, 7254352 - 7254055
Alignment:
Q  9 accacagaccatgaaaaatatcaaaagagaaaacgaaatcaggctacagatttcagtcatgcaaatacaacgtaataggaaattcataactattataaaa 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  7254352 accacagaccatgaaaaatatcaaaagagaaaacgaaatcaggctacagatttcagtcatgcaaatacaaagtagtaggaaattcataactattataaaa 7254253  T
Q  109 actaagtcatgcatataataaaataaacaaacataccatggagtatatgcaggcaatcacagcatatgtgacaaaaatgaagaagaacttgtagtttgcg 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  7254252 actaagtcatgcatataataaaataaacaaacataccatggagtatatgcaggcattcacagcatatgtgacaaaaatgaagaagaacttgtagtttgcg 7254153  T
Q  209 tgaccgacacagttatttatccaaatgcaatggtgatccttacaaccaataaacaacactttttgtcattatccaaaaagcccaagataaaacttgat 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7254152 tgaccgacacagttatttatccaaatgcaatggtgatccttacaaccaataaacaacactttttgtcattatccaaaaagcccaagataaaacttgat 7254055  T

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