View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4836_high_1_N (Length: 630)
Name: NF4836_high_1_N
Description: NF4836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4836_high_1_N |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 465; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 142 - 630
Target Start/End: Original strand, 2115024 - 2115512
Alignment:
| Q |
142 |
acagtcagtgttgctgaaggaatgagatgcagaggttcagattccttaccaaacatattcatcattagagaaccaagtgagttttgtgttgctagcttct |
241 |
Q |
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|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2115024 |
acagtcagagtagctgaaggaatgagatgcagaggttcagattccttaccaaacatattcatcattagagaaccaagtgagttttgtgttgctagcttct |
2115123 |
T |
|
| Q |
242 |
caatgcttccagcaccaatctcctccatttttcttctatgttcaaagtatccgacatactccgaacatatatagtcagatggattcacaaataagcatgg |
341 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2115124 |
caatgcttccagcaccaatctcctccatttttcttctatgttcaaagtatccgacatactccgaacatatatagtcagatggattcacaaataagcatgg |
2115223 |
T |
|
| Q |
342 |
aatccaagctgacagcgcatcaaacgaatcaaaggaagaacttttcttgtctgaattcatagcaatggcgagtccggctgtaatgacgctgctagcaatt |
441 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
2115224 |
aatccaagctgacaacgcatcaaacgaatcaaaggaagaacttttcttgtccgaattcatagcaatggcgagtccagctgtaatgacgctgctagcaatt |
2115323 |
T |
|
| Q |
442 |
cgaagtctatgtttcactttcttacttctaattctctcaattggagcagatgcaaatggagggttaaaaagaaaagactcgatgaatgtgccatttttag |
541 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2115324 |
cgaagtctatgtttcactttcttacttctaattctctcaattggagcagatgcaaatggagggttaaaaagaaaagactcgatgaatgtgccatttttag |
2115423 |
T |
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| Q |
542 |
ccaatgttttcccggcaagcaatgccatgccagatcctagagagtgaccagccaaccatatattcgaaccattaccaccaacactagcc |
630 |
Q |
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| T |
2115424 |
ccaatgttttcccggcaagcaatgccatgccagatcctagagagtgaccagccaaccatatattcgaaccattaccactaacactagcc |
2115512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 145 - 612
Target Start/End: Original strand, 11872594 - 11873067
Alignment:
| Q |
145 |
gtcagtgttgctgaaggaatgagatgcagaggttcaga---------ttccttaccaaacatattcatcattagagaaccaagtgagttttgtgttgcta |
235 |
Q |
| |
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||||| || ||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||| | || ||| |||| ||||||| |
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| T |
11872594 |
gtcagagtagctgaaggaatgagatgtagaggttcagaatcttcaggttccttaccaaacacattcatcattagagaaactagcgaggtttgggttgcta |
11872693 |
T |
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| Q |
236 |
gcttctcaatgcttccagcaccaatctcctccatttttcttctatgttcaaagtatccgacatactccgaacatatatagtcagatggattcacaaataa |
335 |
Q |
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|| ||||||| ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| ||||||| | |||| ||||||| |||||||| |
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| T |
11872694 |
tctgctcaatgattccagcaccaatatcctccatttttcctctatgttcaaagtatccgacatactccaaacatattttgtcacatggatttacaaataa |
11872793 |
T |
|
| Q |
336 |
gcatggaatccaagctgacagcgcatcaaacgaatcaaaggaagaacttttcttgtctgaattcatagcaatggcgagtccggctgtaatgacgctgcta |
435 |
Q |
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| T |
11872794 |
gcatggaacccaagcagacaaagcagtaaaagaatcaaagga--caattttttgatatccatt-gtagcaaccgcgagtccagctgtgaacatgctgcca |
11872890 |
T |
|
| Q |
436 |
gcaattcgaagtctatgttt-cactttcttacttctaattctctcaattggagcagatgcaaatggagggttaaaaagaaaagactcgatgaatgtgcca |
534 |
Q |
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|| | |||||| || | ||| |||||| ||| || ||||||| |||||||||||||||| |||||||||||| |||||||||||||| |||||| || | |
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| T |
11872891 |
gcgactcgaagcctttctttccacttt-ttatttttaattctttcaattggagcagatggaaatggagggttgaaaagaaaagactcaatgaatatgtcc |
11872989 |
T |
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| Q |
535 |
tttttagccaatgttttcccggcaagcaatgccatgccagatcctagagagtgaccagccaaccatatattcgaacca |
612 |
Q |
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|| ||||||| | ||| || |||||||||| || || || ||||| ||||| |||||||||||||| ||||||||| |
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| T |
11872990 |
ttcttagccatagcttttcctccaagcaatgcaattcctgaacctagggagtggccagccaaccatattttcgaacca |
11873067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 90; Significance: 4e-43; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 28466583 - 28466494
Alignment:
| Q |
1 |
tccaacaatggtgttggtggtttttcagcagagaaattgatcttccattcatctttttctttccttataatagtcctttccccatcactg |
90 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28466583 |
tccaacaatggtgttggtggtttttcagcagagaaattgatcttccattcatctttttctttccttataatagtcctttccccatcactg |
28466494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 28475004 - 28474915
Alignment:
| Q |
1 |
tccaacaatggtgttggtggtttttcagcagagaaattgatcttccattcatctttttctttccttataatagtcctttccccatcactg |
90 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||||| |
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| T |
28475004 |
tccaacaatggtgttggtggtttttcagcagagaaattgatcttccattcatctttttctttccttataacagtcctctcctcatcactg |
28474915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 154 - 332
Target Start/End: Complemental strand, 42050762 - 42050584
Alignment:
| Q |
154 |
gctgaaggaatgagatgcagaggttcagattccttaccaaacatattcatcattagagaaccaagtgagttttgtgttgctagcttctcaatgcttccag |
253 |
Q |
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|||||||||||||| |||| |||||||||||||| |||||| | ||||| ||| ||||||||||||||| ||||||| | | || || ||| | |
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| T |
42050762 |
gctgaaggaatgaggtgcaacggttcagattccttcccaaacgcacccatcaataggccaccaagtgagttttgagttgctaacctttcgattactccgg |
42050663 |
T |
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| Q |
254 |
caccaatctcctccatttttcttctatgttcaaagtatccgacatactccgaacatatatagtcagatggattcacaaa |
332 |
Q |
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| T |
42050662 |
cgccaatgtcctccatttttctcctgtgttcgaagtatccaatatactctgaacatatatggtcagatggattcacaaa |
42050584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 483 - 599
Target Start/End: Complemental strand, 42050427 - 42050311
Alignment:
| Q |
483 |
tggagcagatgcaaatggagggttaaaaagaaaagactcgatgaatgtgccatttttagccaatgttttcccggcaagcaatgccatgccagatcctaga |
582 |
Q |
| |
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|||||||||| ||||||||||||| ||||||||||| || || || ||||||| || |||| |||||||||| |||||||||||| | || ||||| |
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| T |
42050427 |
tggagcagatacaaatggagggttgaaaagaaaagattcaataaaattgccattcttggccatggttttcccggtaagcaatgccattgctgagcctagg |
42050328 |
T |
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| Q |
583 |
gagtgaccagccaacca |
599 |
Q |
| |
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||||| ||||| ||||| |
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| T |
42050327 |
gagtgtccagctaacca |
42050311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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