View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4836_high_2 (Length: 457)

Name: NF4836_high_2
Description: NF4836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4836_high_2
NF4836_high_2
[»] chr4 (2 HSPs)
chr4 (4-305)||(6097978-6098275)
chr4 (63-187)||(16388258-16388382)
[»] chr2 (4 HSPs)
chr2 (61-337)||(20175987-20176259)
chr2 (68-177)||(21527266-21527375)
chr2 (405-451)||(8503647-8503693)
chr2 (403-453)||(28925003-28925053)
[»] chr7 (3 HSPs)
chr7 (63-200)||(9738042-9738179)
chr7 (402-453)||(1848808-1848859)
chr7 (402-453)||(2563284-2563335)
[»] scaffold0198 (1 HSPs)
scaffold0198 (69-184)||(884-1000)
[»] scaffold0034 (1 HSPs)
scaffold0034 (402-453)||(75881-75932)
[»] scaffold1724 (1 HSPs)
scaffold1724 (69-163)||(789-883)
[»] scaffold0190 (1 HSPs)
scaffold0190 (63-177)||(28852-28966)
[»] chr8 (1 HSPs)
chr8 (405-451)||(21838774-21838820)
[»] scaffold0018 (1 HSPs)
scaffold0018 (93-158)||(39404-39469)
[»] chr6 (1 HSPs)
chr6 (68-177)||(23879836-23879945)
[»] chr5 (2 HSPs)
chr5 (69-177)||(22442300-22442408)
chr5 (404-454)||(25570383-25570433)


Alignment Details
Target: chr4 (Bit Score: 93; Significance: 4e-45; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 4 - 305
Target Start/End: Complemental strand, 6098275 - 6097978
Alignment:
Q  4 tattggttctggaattgaacaccatgtaggctatacttttagtggagaagc-agagacatattctttcatcacttttgggatccatcttccttctttgtt 102  Q
    |||||||| ||||||||||||| ||||| ||| || | ||||||||| ||| | ||| |||||| |||||||||||||||||||||||| ||||||||||    
T  6098275 tattggttatggaattgaacactatgtaagctctattgttagtggagtagccaaaga-atattccttcatcacttttgggatccatctttcttctttgtt 6098177  T
Q  103 cacgatcagccaagatgtagcacttactcccaaaaacattaaaatatttgacagttggtttcctttctttccatagttcatagagtgtagaagaggtacg 202  Q
    || |  | ||||||||||| ||||| |||||||| |||| ||||||||| |||||||| || ||  ||||||| ||||||||||| ||||||||||||      
T  6098176 cagggcctgccaagatgtaacacttgctcccaaagacatgaaaatatttcacagttggctttctacctttccacagttcatagagagtagaagaggta-- 6098079  T
Q  203 taccagaccttagggtaacacgattatggatgtagtaggcactcttaatggcttcaacccaaaaataatacggaagttttttggcatgtaacattaccct 302  Q
    ||  ||| ||||| ||||||| ||| ||||||||  | ||| | || ||||||| | |||| ||||  || ||||| ||||||||||||||||| |||||    
T  6098078 ta--agatcttagagtaacacaattgtggatgtaacaagcagtgtttatggctttagcccataaatgttagggaagctttttggcatgtaacataaccct 6097981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 63 - 187
Target Start/End: Original strand, 16388258 - 16388382
Alignment:
Q  63 attctttcatcacttttgggatccatcttccttctttgttcacgatcagccaagatgtagcacttactcccaaaaacattaaaatatttgacagttggtt 162  Q
    |||| ||| ||||| || ||||||||||||||||| |  || | ||||| ||| |||||| ||||||| ||||| |||| ||||||||||||||| ||||    
T  16388258 attccttcctcactctttggatccatcttccttctgtaatctctatcagacaaaatgtagtacttactaccaaacacatgaaaatatttgacagtaggtt 16388357  T
Q  163 tcctttctttccatagttcatagag 187  Q
    | ||| | |||||||| ||||||||    
T  16388358 ttcttcccttccatagctcatagag 16388382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 92; Significance: 2e-44; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 61 - 337
Target Start/End: Original strand, 20175987 - 20176259
Alignment:
Q  61 atattctttcatcacttttgggatccatcttccttctttgttcacgatcagccaagatgtagcacttactcccaaaaacattaaaatatttgacagttgg 160  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| ||| ||| ||||||||||||||||||||||||||| ||||||||| ||||||||    
T  20175987 atattctttcatcacttttgggatccatctttcttctttgttcactatctgcctagatgtagcacttactcccaaaaacatgaaaatatttcacagttgg 20176086  T
Q  161 tttcctttctttccatagttcatagagtgtagaagaggtacgtaccagaccttagggtaacacgattatggatgtagtaggcactcttaatggcttcaac 260  Q
     || ||  ||||||||||||||||||| ||| |||    | |||| ||||||||| |||||| |||| || |||||  | | | | || |||   ||| |    
T  20176087 ctttctacctttccatagttcatagagagtataag----aagtactagaccttagagtaacatgattctgaatgtaacaagtagtgttcatgatgtcagc 20176182  T
Q  261 ccaaaaataatacggaagttttttggcatgtaacattacccttgctgactcttgaaaagttctattcttgcgctcaa 337  Q
    | | |||| ||| || |  ||||| ||||||||||| |||||||| |||||||| ||||||||||| ||||| ||||    
T  20176183 ctagaaattatatggtaactttttagcatgtaacataacccttgcggactcttgcaaagttctatttttgcgttcaa 20176259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 68 - 177
Target Start/End: Original strand, 21527266 - 21527375
Alignment:
Q  68 ttcatcacttttgggatccatcttccttctttgttcacgatcagccaagatgtagcacttactcccaaaaacattaaaatatttgacagttggtttcctt 167  Q
    ||||||||||||||||||||| |||||||| || || | ||| ||||  ||||| || || || ||||||||||||||||||||||| || ||||| |||    
T  21527266 ttcatcacttttgggatccattttccttctgtgatctctatctgccactatgtaacatttgctaccaaaaacattaaaatatttgactgtaggttttctt 21527365  T
Q  168 tctttccata 177  Q
     | |||||||    
T  21527366 cccttccata 21527375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 405 - 451
Target Start/End: Complemental strand, 8503693 - 8503647
Alignment:
Q  405 ttgcaatcttccgattccttacctgaaaattggttagatttcaaatt 451  Q
    |||||||||| |||| |||||||||||||||||||||||||||||||    
T  8503693 ttgcaatctttcgataccttacctgaaaattggttagatttcaaatt 8503647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 403 - 453
Target Start/End: Original strand, 28925003 - 28925053
Alignment:
Q  403 cgttgcaatcttccgattccttacctgaaaattggttagatttcaaattca 453  Q
    ||||||||||||||   ||||||||||||||||||||||||||||||||||    
T  28925003 cgttgcaatcttccttctccttacctgaaaattggttagatttcaaattca 28925053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 8e-22; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 63 - 200
Target Start/End: Complemental strand, 9738179 - 9738042
Alignment:
Q  63 attctttcatcacttttgggatccatcttccttctttgttcacgatcagccaagatgtagcacttactcccaaaaacattaaaatatttgacagttggtt 162  Q
    |||| ||||||||||||  ||||||||||||||  |||||| | || |||||| |||||||| |||||  |||| |||| |||||||||||||||   ||    
T  9738179 attccttcatcacttttaagatccatcttccttacttgttctctattagccaatatgtagcatttactttcaaacacatgaaaatatttgacagtatatt 9738080  T
Q  163 tcctttctttccatagttcatagagtgtagaagaggta 200  Q
    | ||| ||||||| ||||||||||| ||||||||||||    
T  9738079 ttcttcctttccacagttcatagagagtagaagaggta 9738042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 402 - 453
Target Start/End: Complemental strand, 1848859 - 1848808
Alignment:
Q  402 gcgttgcaatcttccgattccttacctgaaaattggttagatttcaaattca 453  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  1848859 gcgttgcaatcttccgtctccttacctgaaaattggttagatttcaaattca 1848808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 402 - 453
Target Start/End: Original strand, 2563284 - 2563335
Alignment:
Q  402 gcgttgcaatcttccgattccttacctgaaaattggttagatttcaaattca 453  Q
    ||||||||||||| ||  ||||||||||||||||||||||||||||||||||    
T  2563284 gcgttgcaatctttcgtctccttacctgaaaattggttagatttcaaattca 2563335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0198 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: scaffold0198
Description:

Target: scaffold0198; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 69 - 184
Target Start/End: Original strand, 884 - 1000
Alignment:
Q  69 tcatcacttttgggatccatcttccttctttgttcacgatcagccaagatgtagcacttactcccaaaaacattaaaatatttgacagttggtttccttt 168  Q
    |||||||| |||||||||||||||||||| | ||| | ||| ||||||||||| ||||| || ||||||||||  || |||||||||||||||||  |||    
T  884 tcatcactcttgggatccatcttccttctgtattctctatctgccaagatgtaacacttgcttccaaaaacatggaagtatttgacagttggtttttttt 983  T
Q  169 -ctttccatagttcata 184  Q
     ||||||| ||||||||    
T  984 cctttccacagttcata 1000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 402 - 453
Target Start/End: Original strand, 75881 - 75932
Alignment:
Q  402 gcgttgcaatcttccgattccttacctgaaaattggttagatttcaaattca 453  Q
    |||||||||||||||| |||||||| ||||||| ||||||||||||||||||    
T  75881 gcgttgcaatcttccgtttccttacttgaaaatgggttagatttcaaattca 75932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1724 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold1724
Description:

Target: scaffold1724; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 69 - 163
Target Start/End: Original strand, 789 - 883
Alignment:
Q  69 tcatcacttttgggatccatcttccttctttgttcacgatcagccaagatgtagcacttactcccaaaaacattaaaatatttgacagttggttt 163  Q
    |||||||| ||||||||||| |||||||| ||||| | ||| || || ||||| ||||| || |||||||||| ||||||||| ||| |||||||    
T  789 tcatcactcttgggatccattttccttctatgttctctatctgctaatatgtaacacttgcttccaaaaacatgaaaatatttaacaattggttt 883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0190 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 63 - 177
Target Start/End: Complemental strand, 28966 - 28852
Alignment:
Q  63 attctttcatcacttttgggatccatcttccttctttgttcacgatcagccaagatgtagcacttactcccaaaaacattaaaatatttgacagttggtt 162  Q
    |||| ||||||| | || ||||||||||||||| | || || | ||||| ||||||||||||||| || ||||| || |  |||||||||||||| ||||    
T  28966 attccttcatcattcttaggatccatcttccttttgtgatctctatcagacaagatgtagcacttgctaccaaacacgtggaaatatttgacagtaggtt 28867  T
Q  163 tcctttctttccata 177  Q
    | ||  |||||||||    
T  28866 ttctccctttccata 28852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 405 - 451
Target Start/End: Original strand, 21838774 - 21838820
Alignment:
Q  405 ttgcaatcttccgattccttacctgaaaattggttagatttcaaatt 451  Q
    |||| ||||||| | ||||||||||||||||||||||||||||||||    
T  21838774 ttgcgatcttccaactccttacctgaaaattggttagatttcaaatt 21838820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 93 - 158
Target Start/End: Original strand, 39404 - 39469
Alignment:
Q  93 cttctttgttcacgatcagccaagatgtagcacttactcccaaaaacattaaaatatttgacagtt 158  Q
    ||||||| ||||||||| |||||||||||||| |||||||| || |||| ||| ||||| ||||||    
T  39404 cttctttattcacgatctgccaagatgtagcatttactcccgaagacatgaaagtattttacagtt 39469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 68 - 177
Target Start/End: Complemental strand, 23879945 - 23879836
Alignment:
Q  68 ttcatcacttttgggatccatcttccttctttgttcacgatcagccaagatgtagcacttactcccaaaaacattaaaatatttgacagttggtttcctt 167  Q
    ||||||||||||||||||||| |||||||| | ||| | ||  ||||  |||||| | || || |||||||||| |||||| |||||||| ||||| |||    
T  23879945 ttcatcacttttgggatccattttccttctgtattctctatatgccagtatgtagaatttgctaccaaaaacatgaaaatacttgacagtaggttttctt 23879846  T
Q  168 tctttccata 177  Q
     | |||||||    
T  23879845 cccttccata 23879836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 69 - 177
Target Start/End: Complemental strand, 22442408 - 22442300
Alignment:
Q  69 tcatcacttttgggatccatcttccttctttgttcacgatcagccaagatgtagcacttactcccaaaaacattaaaatatttgacagttggtttccttt 168  Q
    |||||| | ||||||||||| |||||| | ||||| | ||| || || ||||||||||| || ||||||| || ||| |||||| || | |||||||||     
T  22442408 tcatcaatcttgggatccattttccttttatgttctctatctgcgaaaatgtagcacttgcttccaaaaagatgaaagtatttgtcaataggtttccttc 22442309  T
Q  169 ctttccata 177  Q
    |||||||||    
T  22442308 ctttccata 22442300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 404 - 454
Target Start/End: Complemental strand, 25570433 - 25570383
Alignment:
Q  404 gttgcaatcttccgattccttacctgaaaattggttagatttcaaattcag 454  Q
    |||||||||||  |||||||||||| ||||||||||| |||| ||||||||    
T  25570433 gttgcaatcttttgattccttacctaaaaattggttaaatttgaaattcag 25570383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University